Evidence map›Paper›PMID 40016135›Full record

ArticleJournal of microbiology and biotechnology2025

Dsembler - DNA Assembly Designer: A Tool for Facilitating Assembly of Oligomers.

Aporva Gupta, Gyeongmin Park, So-Yoon Park, Haneul Kim, Eugene Rha, Dae-Hee Lee, Seung-Goo Lee, Haseong Kim

Abstract read
In one paragraph

Article in Journal of microbiology and biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Aporva GuptaSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Gyeongmin ParkSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
So-Yoon ParkDepartment of Chemical Engineering and Applied Chemistry, Chungnam National University, Daejeon, 34134, Republic of Korea.
Haneul KimSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Eugene RhaSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Dae-Hee LeeSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Seung-Goo LeeSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.
Haseong KimSynthetic Biology and Bioengineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synthetic biology has garnered significant global interest owing to its diverse applications in bio-based production, biosensing, living therapeutics, and drug delivery. This heightened interest has increased the demand for novel protein synthesis methods and genome-scale assemblies. However, gene assembly from oligomers presents several challenges, including the risk of incorrect assembly between oligomers, self-annealing, and the potential for insertions or deletions resulting from misannealed oligomers. Dsembler (DNA Assembly Designer) is a web-based software application designed to assemble long DNA sequences. It provides a set of oligomers with optimal melting temperatures and GC overlap, which facilitates a commercially available oligomer pool service. By enhancing the accuracy of oligomer design, Dsembler has addressed critical challenges in synthetic biology and supported advancements in genetic engineering and molecular biology.

Indexed as

DNAGenetic EngineeringSoftwareSynthetic BiologyDNADNA oligomer assemblyDNA synthesisDsemblerLong-DNA design toololigomerssynthetic biology

Identifiers

PMID40016135
PMCPMC11896793

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.