Evidence map›Paper›PMID 40014811›Full record

ArticleJournal of the American Chemical Society2025

Probing the Dynamics of Yersinia Adhesin A (YadA) in Outer Membranes Hints at Requirements for β-Barrel Membrane Insertion.

Jayasubba Reddy Yarava, Marcella Orwick-Rydmark, David Ryoo, Albert Hofstetter, James C Gumbart, Michael Habeck, Barth-Jan van Rossum, Dirk Linke, Hartmut Oschkinat

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jayasubba Reddy YaravaLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Straße 10, 13125 Berlin, Germany.ORCID 0000-0002-8704-5513
Marcella Orwick-RydmarkDepartment of Biosciences, University of Oslo, P.O.Box 1066 Blindern, 0316 Oslo, Norway.
David RyooInterdisciplinary Bioengineering Graduate Program, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Albert HofstetterDepartment of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland.
James C GumbartSchool of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.ORCID 0000-0002-1510-7842
Michael HabeckMicroscopic Image Analysis Group, Jena University Hospital, Am Klinikum 1, 07747, Jena, Germany.
Barth-Jan van RossumLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Straße 10, 13125 Berlin, Germany.
Dirk LinkeDepartment of Biosciences, University of Oslo, P.O.Box 1066 Blindern, 0316 Oslo, Norway.ORCID 0000-0003-3150-6752
Hartmut OschkinatLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Straße 10, 13125 Berlin, Germany.ORCID 0000-0002-4384-9544

Funding

Elucidating the mechanisms of protein secretion across the outer membrane by bacterial autotransportersR01GM148586 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI James C. Gumbart · 2023 to 2026
$1.8M
NIGMS NIH HHS R01 GM148586
6 · The paper itself

Abstract

The vast majority of cells are protected and functionalized by a dense surface layer of glycans, proteoglycans, and glycolipids. This surface represents an underexplored space in structural biology that is exceedingly challenging to recreate in vitro. Here, we investigate β-barrel protein dynamics within an asymmetric outer membrane environment, with the trimeric autotransporter Yersinia adhesin A (YadA) as an example. Magic-angle spinning NMR relaxation data and a model-free approach reveal increased mobility in the second half of strand β2 after the conserved G72, which is responsible for membrane insertion and autotransport, and in the subsequent loop toward β3. In contrast, the protomer-protomer interaction sites (β1

Indexed as

Adhesins, BacterialYersiniaModels, MolecularMolecular Dynamics SimulationAdhesins, BacterialYadA protein, Yersinia

Identifiers

PMID40014811
PMCPMC11912334

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.