Evidence map›Paper›PMID 40011465›Full record

ArticleNature communications2025

Design of high-affinity binders to immune modulating receptors for cancer immunotherapy.

Wei Yang, Derrick R Hicks, Agnidipta Ghosh, Tristin A Schwartze, Brian Conventry, Inna Goreshnik, Aza Allen, Samer F Halabiya, Chan Johng Kim, Cynthia S Hinck and 18 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Protein engineering: status report.Protein engineering, design & selection : PEDS · 2026
    Review
  12. Sequence and structural determinants of efficaciousbioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Review
  15. Recent progress and future challenges in structure-based protein-protein interaction prediction.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  16. Article
  17. AI-assisted design of ligands for lipocalin-2.Frontiers in immunology · 2025
    Article
  18. bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Wei YangDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Derrick R HicksDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Agnidipta GhoshDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, USA.ORCID http://orcid.org/0000-0002-7753-0240
Tristin A SchwartzeDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA, USA.
Brian ConventryDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-6910-6255
Inna GoreshnikDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Aza AllenDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Samer F HalabiyaDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Chan Johng KimDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Cynthia S HinckDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA, USA.
David S LeeDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-6539-4272
Asim K BeraDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-9473-2912
Zhe LiDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Yujia WangDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Thomas SchlichthaerleDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Longxing CaoDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Buwei HuangDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Sarah GarrettDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, USA.
Stacey R GerbenDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-0313-6248
Stephen RettieDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Piper HeineDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Analisa MurrayDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Natasha EdmanDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-7315-7127
Lauren CarterDepartment of Biochemistry, University of Washington, Seattle, WA, USA.
Lance StewartDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-4264-5125
Steven C AlmoDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York, USA.
Andrew P HinckDepartment of Structural Biology, University of Pittsburgh, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0003-3320-8054
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA, USA. dabaker@uw.edu.ORCID http://orcid.org/0000-0001-7896-6217

Funding

Project 4: Novel reagent development to enable molecular characterizationU19AG065156 · NIA · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL, MONTINE, THOMAS J · 2020 to 2024
$15.9M
Designed Vehicles for Blood Brain Barrier TraversalR01AG063845 · NIA · UNIVERSITY OF WASHINGTON · PI BAKER, DAVID · 2019 to 2023
$2.5M
NIA NIH HHS R01 AG063845NIA NIH HHS U19 AG065156United States Department of Defense | Defense Advanced Research Projects Agency (DARPA) HR001117S0003United States Department of Defense | Defense Advanced Research Projects Agency (DARPA) HR001120S0052U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) R01AG063845U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) U19AG065156
6 · The paper itself

Abstract

Immune receptors have emerged as critical therapeutic targets for cancer immunotherapy. Designed protein binders can have high affinity, modularity, and stability and hence could be attractive components of protein therapeutics directed against these receptors, but traditional Rosetta based protein binder methods using small globular scaffolds have difficulty achieving high affinity on convex targets. Here we describe the development of helical concave scaffolds tailored to the convex target sites typically involved in immune receptor interactions. We employed these scaffolds to design proteins that bind to TGFβRII, CTLA-4, and PD-L1, achieving low nanomolar to picomolar affinities and potent biological activity following experimental optimization. Co-crystal structures of the TGFβRII and CTLA-4 binders in complex with their respective receptors closely match the design models. These designs should have considerable utility for downstream therapeutic applications.

Indexed as

B7-H1 AntigenCTLA-4 AntigenImmunotherapyNeoplasmsCrystallography, X-RayDrug DesignHumansModels, MolecularProtein BindingReceptor, Transforming Growth Factor-beta Type IIB7-H1 AntigenCD274 protein, humanCTLA-4 AntigenCTLA4 protein, humanReceptor, Transforming Growth Factor-beta Type II

Identifiers

PMID40011465
PMCPMC11865580

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.