Evidence map›Paper›PMID 40008038›Full record

ArticleFrontiers in microbiology2025

Whole genomic analysis uncovers high genetic diversity of rifampicin-resistant

Tuelo Mogashoa, Johannes Loubser, Ontlametse T Choga, Justice Tresor Ngom, Wonderful T Choga, Mpaphi B Mbulawa, Tuduetso Molefi, One Stephen, Topo Makhondo, Kedumetse Seru and 13 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
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  4. Modified cetyltrimethylammonium bromide DNA extraction forThe Pan African medical journal · 2026
    Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Tuelo MogashoaBotswana Harvard Health Partnership, Gaborone, Botswana.
Johannes LoubserSouth African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Ontlametse T ChogaBotswana Harvard Health Partnership, Gaborone, Botswana.
Justice Tresor NgomSouth African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Wonderful T ChogaBotswana Harvard Health Partnership, Gaborone, Botswana.
Mpaphi B MbulawaBotswana National Tuberculosis Reference Laboratory, Gaborone, Botswana.
Tuduetso MolefiBotswana National Tuberculosis Program, Ministry of Health, Gaborone, Botswana.
One StephenBotswana National Tuberculosis Reference Laboratory, Gaborone, Botswana.
Topo MakhondoBotswana National Tuberculosis Program, Ministry of Health, Gaborone, Botswana.
Kedumetse SeruBotswana Harvard Health Partnership, Gaborone, Botswana.
Patience MotshosiBotswana Harvard Health Partnership, Gaborone, Botswana.
Boitumelo ZuzeBotswana Harvard Health Partnership, Gaborone, Botswana.
Joseph MakhemaBotswana Harvard Health Partnership, Gaborone, Botswana.
Rosemary M MusondaBotswana Harvard Health Partnership, Gaborone, Botswana.
Dimpho OtukileVictus Global Botswana Organization, Gaborone, Botswana.
Chawangwa ModongoVictus Global Botswana Organization, Gaborone, Botswana.
Botshelo T KgwaadiraTB/HIV Program, Botswana-University of Maryland School of Medicine, Health Initiative (BUMMHI), Gaborone, Botswana.
Keabetswe FaneTB/HIV Program, Botswana-University of Maryland School of Medicine, Health Initiative (BUMMHI), Gaborone, Botswana.
Simani GaseitsiweBotswana Harvard Health Partnership, Gaborone, Botswana.
Rob M WarrenSouth African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Sikhulile Moyo *Botswana Harvard Health Partnership, Gaborone, Botswana.
Anzaan Dippenaar *Family Medicine and Population Health, University of Antwerp, Antwerp, Belgium.
Elizabeth M Streicher *South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.

Funding

Viral Diversity an Innovative Biomarker for Refining Estimates of HIV IncidenceK43TW012350 · FIC · THE BOTSWANA HARVARD HEALTH PARTNERSHIP · PI Sikhulile Moyo · 2022 to 2026
$682k
FIC NIH HHS K43 TW012350
6 · The paper itself

Abstract

Background: The emergence of drug-resistant Methods: This study included 202 stored Results: WGS analysis revealed multidrug resistance (57.9%: 95% CI; 50.7-64.8), Pre-XDR (16.8%, 95% CI: 11.9-22.7), RR-TB (20.2%: 95% CI: 14.98-26.5), and HR-TB (0.5%, 95% CI; 0.01-2.7). We identified a high genetic diversity with three predominant lineages: lineage 4 (60.9%, 95% CI; 53.8-67.7), lineage 1 (22.8%: 95% CI; 17.2-29.2), and lineage 2 (13.9%, 95% CI: 9.4-19.4). The most frequently observed drug resistance mutations for rifampicin, isoniazid, ethambutol, streptomycin, pyrazinamide, and fluoroquinolones were Conclusions: This study highlights the high genetic diversity of

Indexed as

Botswanagenetic diversityrifampicin resistancetuberculosiswhole genome sequencing

Identifiers

PMID40008038
PMCPMC11855114

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.