Evidence map›Paper›PMID 40007955›Full record

ArticleFrontiers in plant science2025

Transcriptomic reprogramming and epigenetic regulation underlying pollination-dependent and auxin-induced fruit set in tomato.

Xiaohan Li, Bing He, Anis Djari, Pierre Frasse, Elie Maza, Farid Regad, Julien Pirrello, Guojian Hu, Mondher Bouzayen

Abstract read
In one paragraph

Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xiaohan Li *College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Bing He *College of Horticulture, China Agricultural University, Beijing, China.
Anis DjariLaboratoire de Recherche en Sciences Végétales-Génomique et Biotechnologie des Fruits-UMR5546, Université de Toulouse, Centre national de la recherche scientifique (CNRS), Université de Toulouse 3 - Paul Sabatier (UPS), Toulouse-Institut National Polytechnique (INP), Toulouse, France.
Pierre FrasseLaboratoire de Recherche en Sciences Végétales-Génomique et Biotechnologie des Fruits-UMR5546, Université de Toulouse, Centre national de la recherche scientifique (CNRS), Université de Toulouse 3 - Paul Sabatier (UPS), Toulouse-Institut National Polytechnique (INP), Toulouse, France.
Elie MazaLaboratoire de Recherche en Sciences Végétales-Génomique et Biotechnologie des Fruits-UMR5546, Université de Toulouse, Centre national de la recherche scientifique (CNRS), Université de Toulouse 3 - Paul Sabatier (UPS), Toulouse-Institut National Polytechnique (INP), Toulouse, France.
Farid RegadLaboratoire de Recherche en Sciences Végétales-Génomique et Biotechnologie des Fruits-UMR5546, Université de Toulouse, Centre national de la recherche scientifique (CNRS), Université de Toulouse 3 - Paul Sabatier (UPS), Toulouse-Institut National Polytechnique (INP), Toulouse, France.
Julien PirrelloLaboratoire de Recherche en Sciences Végétales-Génomique et Biotechnologie des Fruits-UMR5546, Université de Toulouse, Centre national de la recherche scientifique (CNRS), Université de Toulouse 3 - Paul Sabatier (UPS), Toulouse-Institut National Polytechnique (INP), Toulouse, France.
Guojian HuCollege of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Mondher BouzayenLaboratoire de Recherche en Sciences Végétales-Génomique et Biotechnologie des Fruits-UMR5546, Université de Toulouse, Centre national de la recherche scientifique (CNRS), Université de Toulouse 3 - Paul Sabatier (UPS), Toulouse-Institut National Polytechnique (INP), Toulouse, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transition from flower to fruit, naturally triggered by flower pollination and known as fruit set, is instrumental for plant reproduction, seed formation, and crop yield. Notably, this developmental process can also proceed in the absence of flower fertilization, although it remains unclear whether pollination-dependent and pollination-independent fruit sets undergo similar transcriptomic reprogramming. Genome-wide transcriptomic profiling of the flower-to-fruit transition, either pollination-induced or triggered by auxin treatment, shows that both types of triggers modulate the expression of a common large set of genes primarily expressed in maternal tissues. These include genes related to auxin, gibberellin, brassinosteroid, and ethylene signaling. Furthermore, analysis of changes in histone marking during this transition phase indicated that gene reprogramming underlying both types of fruit set primarily correlated with dynamic changes in H3K9ac and H3K4me3 histone marks. Notably,

Indexed as

auxinepigenetic regulationfruit setpollinationtomatotranscriptomic reprogramming

Identifiers

PMID40007955
PMCPMC11850327

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.