Evidence map›Paper›PMID 40007558›Full record

ArticleFrontiers in molecular biosciences2025

Homologous recombination deficiency test validation in patients with high-grade advanced ovarian cancer.

Angelica Nogueira Rodrigues, Andreza Karine de Barros Almeida Souto, Diocésio Alves Pinto de Andrade, Larissa Müller Gomes, Sandra Satie Koide, Renata de Godoy E Silva, Bruno Batista de Souza, Juliana Doblas Massaro, Andréia Cristina de Melo, Andrea Morais Borges and 19 more

Abstract read
In one paragraph

Article in Frontiers in molecular biosciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Angelica Nogueira RodriguesOncoclínicas&Co, São Paulo, Brazil.
Andreza Karine de Barros Almeida SoutoOncoclínicas&Co, São Paulo, Brazil.
Diocésio Alves Pinto de AndradeOncoclínicas&Co, São Paulo, Brazil.
Larissa Müller GomesOncoclínicas&Co, São Paulo, Brazil.
Sandra Satie KoideOncoclínicas&Co, São Paulo, Brazil.
Renata de Godoy E SilvaOncoclínicas&Co, São Paulo, Brazil.
Bruno Batista de SouzaOncoclínicas&Co, São Paulo, Brazil.
Juliana Doblas MassaroOncoclínicas&Co, São Paulo, Brazil.
Andréia Cristina de MeloOncoclínicas&Co, São Paulo, Brazil.
Andrea Morais BorgesOncoclínicas&Co, São Paulo, Brazil.
Camila GiroOncoclínicas&Co, São Paulo, Brazil.
Carlos Augusto Vasconcelos de AndradeOncoclínicas&Co, São Paulo, Brazil.
Cesar Martins da CostaOncoclínicas&Co, São Paulo, Brazil.
Daniel Luiz GimenesOncoclínicas&Co, São Paulo, Brazil.
Eduardo Caminha Bandeira de MelloOncoclínicas&Co, São Paulo, Brazil.
Fernanda Cesar de OliveiraOncoclínicas&Co, São Paulo, Brazil.
Frederico Müller de Toledo LimaOncoclínicas&Co, São Paulo, Brazil.
Gabriel Lima LopesOncoclínicas&Co, São Paulo, Brazil.
Gustavo de Oliveira BretasOncoclínicas&Co, São Paulo, Brazil.
Gustavo Guerra JacobOncoclínicas&Co, São Paulo, Brazil.
Herika Lucia da Costa SilvaOncoclínicas&Co, São Paulo, Brazil.
Juliana Ferrari NotaroOncoclínicas&Co, São Paulo, Brazil.
Lara Ladislau AlvesOncoclínicas&Co, São Paulo, Brazil.
Marcos Veloso MoitinhoOncoclínicas&Co, São Paulo, Brazil.
Mirian Cristina da SilvaOncoclínicas&Co, São Paulo, Brazil.
Roberto AbramoffOncoclínicas&Co, São Paulo, Brazil.
Thais Amaral da Cunha RauberOncoclínicas&Co, São Paulo, Brazil.
Rodrigo DienstmannOncoclínicas&Co, São Paulo, Brazil.
Fernanda Christtanini KoyamaOncoclínicas&Co, São Paulo, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Along with Objective: To technically validate an Methods: This is a prospective cohort study conducted at the Oncoclínicas Precision Medicine (OCPM) laboratory using samples from patients with advanced or relapsed platinum-sensitive ovarian cancer eligible for HRD testing in a diagnostic clinical setting at Oncoclínicas and Co. We assessed the performance of the in-house test (GS Focus HRD) using Cohen's kappa statistic to measure agreement with the gold standard assay (MyChoice® HRD Plus CDx) in HRD status classification, along with other accuracy metrics. Results: In total, 41 samples were analyzed (20 HRD-positive, 19 HRD-negative, and 2 inconclusive results with the MyChoice® HRD Plus CDx assay). The GS Focus HRD test demonstrated high concordance for HRD status with the reference test (kappa: 0.8 and 95% CI: 0.60-0.98). Overall accuracy, sensitivity, and specificity were 90%. Six samples had Conclusion: In summary, the results demonstrate substantial agreement and high accuracy of the NGS-based GS Focus HRD test compared to MyChoice® HRD Plus CDx. Our in-house assay is eligible for diagnostic test approval and market access as per Brazilian regulations.

Indexed as

BRCA1/2homologous recombination deficiencynext-generation sequencingovarian cancervalidation

Identifiers

PMID40007558
PMCPMC11850238

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.