Evidence map›Paper›PMID 40007421›Full record

ReviewThe New phytologist2025

Breaking into nature's secret medicine cabinet: lichens - a biochemical goldmine ready for discovery.

Garima Singh, Francesco Dal Grande, Francis M Martin, Marnix H Medema

Abstract readReview
In one paragraph

Review in The New phytologist, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. ARTS-DB 2.0: an expanded database for target-directed genome mining across bacteria and fungi.Database : the journal of biological databases and curation · 2026
    Article
  11. Is the Reindeer LichenMolecules (Basel, Switzerland) · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Garima SinghDepartment of Biology, University of Padova, Via U. Bassi 58/B, 35121, Padova, Italy.ORCID 0000-0003-3753-5431
Francesco Dal GrandeDepartment of Biology, University of Padova, Via U. Bassi 58/B, 35121, Padova, Italy.ORCID 0000-0002-1865-6281
Francis M MartinUniversité de Lorraine, INRAE, UMR Interactions Arbre/Micro-organismes, Centre INRAE Grand-Est Nancy, 54280, Champenoux, France.ORCID 0000-0002-4737-3715
Marnix H MedemaBioinformatics Group, Wageningen University, Droevendaalsesteeg 1, 6708PB, Wageningen, the Netherlands.ORCID 0000-0002-2191-2821

Funding

Laboratory of Excellence ARBRE ANR-11-LABX-0002-01NextGenerationEU (to GS)
6 · The paper itself

Abstract

Secondary metabolites are a crucial source of bioactive compounds playing a key role in the development of new pharmaceuticals. Recently, biosynthetic research has benefited significantly from progress on various fronts, including reduced sequencing costs, improved genome/metabolome mining strategies, and expanding tools/databases to compare and characterize chemical diversity. Steady advances in these fields are crucial for research on non-modal organisms such as lichen-forming fungi (LFF). Although most fungi produce bioactive metabolites, biosynthetic research on LFF (c. 21% of known fungi) lags behind, primarily due to experimental challenges. However, in recent years, several such challenges have been tackled, and, in parallel, a critical foundation of genomic data and pipelines has been established to accomplish the valorization of this potential. Integrating these concurrent advances to accelerate biochemical research in LFF provides a promising opportunity for new discoveries. This review summarizes the following: recent advances in fungal and LFF omics, and chemoinformatics research; studies on LFF biosynthesis, including chemical diversity and evolutionary/phylogenetic aspects; and experimental milestones in LFF biosynthetic gene functions. At the end, we outline a vision and strategy to combine the progress in these research areas to harness the biochemical potential of LFF for pharmaceutical development.

Indexed as

Drug DiscoveryLichensSecondary Metabolismbioactive metabolitesbiosynthetic genesdrug discoverylichenized funginatural productsomicssecondary metabolismsymbiotic fungi

Identifiers

PMID40007421
PMCPMC11923402

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.