Evidence map›Paper›PMID 40007153›Full record

ArticleAnnals of clinical and translational neurology2025

Targeted Long-Read Sequencing as a Single Assay Improves the Diagnosis of Spastic-Ataxia Disorders.

Laura Ivete Rudaks, Igor Stevanovski, Dennis Yeow, Andre L M Reis, Sanjog R Chintalaphani, Pak Leng Cheong, Hasindu Gamaarachchi, Lisa Worgan, Kate Ahmad, Michael Hayes and 11 more

Abstract read
In one paragraph

Article in Annals of clinical and translational neurology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  3. Long-read sequencing for neurological disorders: opportunities, challenges, and future directions.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Laura Ivete RudaksMolecular Medicine Laboratory and Neurology Department, Concord Repatriation General Hospital, Concord, New South Wales, Australia.ORCID 0000-0002-1100-319X
Igor StevanovskiGenomic and Inherited Disease Program, The Garvan Institute of Medical Research, Darlinghurst, New South Wales, Australia.ORCID 0000-0002-7713-1979
Dennis YeowMolecular Medicine Laboratory and Neurology Department, Concord Repatriation General Hospital, Concord, New South Wales, Australia.
Andre L M ReisGenomic and Inherited Disease Program, The Garvan Institute of Medical Research, Darlinghurst, New South Wales, Australia.
Sanjog R ChintalaphaniGenomic and Inherited Disease Program, The Garvan Institute of Medical Research, Darlinghurst, New South Wales, Australia.
Pak Leng CheongMolecular Medicine Laboratory and Neurology Department, Concord Repatriation General Hospital, Concord, New South Wales, Australia.
Hasindu GamaarachchiGenomic and Inherited Disease Program, The Garvan Institute of Medical Research, Darlinghurst, New South Wales, Australia.
Lisa WorganFaculty of Medicine and Health, University of Sydney, Camperdown, New South Wales, Australia.
Kate AhmadNeurology Department, Royal North Shore Hospital, St Leonards, New South Wales, Australia.
Michael HayesMolecular Medicine Laboratory and Neurology Department, Concord Repatriation General Hospital, Concord, New South Wales, Australia.
Andrew HannafordMolecular Medicine Laboratory and Neurology Department, Concord Repatriation General Hospital, Concord, New South Wales, Australia.
Samuel KimMovement Disorders Unit, Neurology Department, Westmead Hospital, Westmead, New South Wales, Australia.
Victor S C FungFaculty of Medicine and Health, University of Sydney, Camperdown, New South Wales, Australia.
Gabor M HalmagyiNeurology Department, Royal Prince Alfred Hospital, Camperdown, New South Wales, Australia.
Andrew MartinMovement Disorders Unit, Neurology Department, Westmead Hospital, Westmead, New South Wales, Australia.
David ManserDepartment of Genetic Medicine, Westmead Hospital, Westmead, New South Wales, Australia.
Michel TchanFaculty of Medicine and Health, University of Sydney, Camperdown, New South Wales, Australia.
Karl NgFaculty of Medicine and Health, University of Sydney, Camperdown, New South Wales, Australia.
Marina L KennersonMolecular Medicine Laboratory and Neurology Department, Concord Repatriation General Hospital, Concord, New South Wales, Australia.
Ira W DevesonGenomic and Inherited Disease Program, The Garvan Institute of Medical Research, Darlinghurst, New South Wales, Australia.
Kishore Raj KumarMolecular Medicine Laboratory and Neurology Department, Concord Repatriation General Hospital, Concord, New South Wales, Australia.ORCID 0000-0003-3482-6962

Funding

Medical Research Future Fund MRF2023126Medical Research Future Fund MRF2025138
6 · The paper itself

Abstract

objectiveThe hereditary spastic-ataxia spectrum disorders are a group of disabling neurological diseases. The traditional genetic testing pathway is complex, multistep and leaves many cases unsolved. We aim to streamline and improve this process using long-read sequencing.

methodsWe developed a targeted long-read sequencing strategy with the capacity to characterise the genetic variation of all types and sizes within 469 disease-associated genes, in a single assay. We applied this to a cohort of 34 individuals with unsolved spastic-ataxia. An additional five individuals with a known genetic diagnosis were included as positive controls.

resultsWe identified causative pathogenic variants that would be sufficient for genetic diagnosis in 14/34 (41%) unsolved participants. The success rate was 5/11 (45%) in those who were naïve to genetic testing and 9/23 (39%) in those who were undiagnosed after prior genetic testing, completed on a clinical basis. Short tandem repeat expansions in FGF14 were the most common (7/34, 21%). Two individuals (2/34, 6%) had biallelic pathogenic expansions in RFC1 and one individual had a monoallelic pathogenic expansion in ATXN8OS/ATXN8. Causative pathogenic sequence variants other than short tandem repeat expansions were found in four individuals, including in VCP, STUB1, ANO10 and SPG7. Furthermore, all five positive controls were identified.

interpretationOur results demonstrate the utility of targeted long-read sequencing in the genetic evaluation of patients with spastic-ataxia spectrum disorders, highlighting both the capacity to increase overall diagnostic yield and to streamline the testing pathway by capturing all known genetic causes in a single assay.

Indexed as

Genetic TestingMuscle SpasticityOptic AtrophySpinocerebellar AtaxiasAdolescentAdultChildFemaleHumansIntellectual DisabilityMaleMiddle AgedYoung Adulthereditary cerebellar ataxiahereditary spastic paraplegiananopore sequencingspinocerebellar ataxia

Identifiers

PMID40007153
PMCPMC12040508

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.