Evidence map›Paper›PMID 40007119›Full record

ArticleBiophysical journal2025

Ergosterol depletion by fish AMP analogs likely enhances fungal membrane permeability.

Samuel Cashman-Kadri, Ismail Fliss, Lucie Beaulieu, Patrick Lagüe

Abstract read
In one paragraph

Article in Biophysical journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Samuel Cashman-KadriInstitute of Nutrition and Functional Foods (INAF), Université Laval, Québec, Quebec, Canada; Department of Food Science, Faculty of Agricultural and Food Sciences, Université Laval, Québec, Quebec, Canada; Québec-Océan, Université Laval, Québec, Quebec, Canada.
Ismail FlissInstitute of Nutrition and Functional Foods (INAF), Université Laval, Québec, Quebec, Canada; Department of Food Science, Faculty of Agricultural and Food Sciences, Université Laval, Québec, Quebec, Canada.
Lucie BeaulieuInstitute of Nutrition and Functional Foods (INAF), Université Laval, Québec, Quebec, Canada; Department of Food Science, Faculty of Agricultural and Food Sciences, Université Laval, Québec, Quebec, Canada; Québec-Océan, Université Laval, Québec, Quebec, Canada.
Patrick LagüeDepartment of Biochemistry, Microbiology and Bioinformatics, Pavillon Alexandre-Vachon, Université Laval, Québec, Quebec, Canada; Institute for Integrative Systems Biology, Université Laval, Québec, Quebec, Canada; The Quebec Network for Research on Protein Function, Engineering, and Applications (PROTEO), Montréal, Quebec, Canada. Electronic address: patrick.lague@bcm.ulaval.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular interactions between a fungal membrane model and SJGAP, a 32-amino-acid antimicrobial peptide (AMP) derived from skipjack tuna GAPDH, as well as four analogs, were investigated using molecular dynamics simulations and Fourier transform infrared (FTIR) spectroscopy. In a previous study, Analog 7, modified by replacing three alanine residues with leucine residues, exhibited unique antifungal activity without any antibacterial effect. This contrasts with other analogs, which showed both antifungal and antibacterial effects. In this study, Analog 7 displayed the strongest interactions with the membrane's hydrophobic core, inserting more deeply and causing significantly greater membrane deformation and thinning compared with the other analogs. Its presence caused significant membrane deformation, evident from the displacement of both the phosphate groups and terminal methyls of the lipids. Notably, Analog 7 was the only analog to induce a marked depletion of ergosterol around the peptide insertion site. FTIR spectroscopy experiments further confirmed the distinctive impact of Analog 7 on a fungal membrane model. The combined results from molecular dynamics simulations and spectroscopy emphasize the critical role of leucine substitutions in Analog 7, particularly at residues 18 and 19 within the central α helix, in promoting membrane thinning and inducing ergosterol depletion, suggesting increased membrane permeabilization, which could explain its previously reported antifungal specificity. This study provides the first insights into the molecular interactions between a GAPDH-derived AMP and a fungal membrane model, offering valuable information about its antifungal mechanism of action.

Indexed as

Antimicrobial PeptidesCell MembraneCell Membrane PermeabilityErgosterolAmino Acid SequenceAnimalsAntifungal AgentsMolecular Dynamics SimulationSpectroscopy, Fourier Transform InfraredAntifungal AgentsAntimicrobial PeptidesErgosterol

Identifiers

PMID40007119
PMCPMC11993923

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.