Evidence map›Paper›PMID 40005589›Full record

ArticleMicroorganisms2025

Diversity and Distribution of Hydrocarbon-Degrading Genes in the Cold Seeps from the Mediterranean and Caspian Seas.

Yogita Warkhade, Laura G Schaerer, Isaac Bigcraft, Terry C Hazen, Stephen M Techtmann

Abstract read
In one paragraph

Article in Microorganisms, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yogita WarkhadeDepartment of Biological Sciences, Michigan Technological University, Houghton, MI 49931, USA.
Laura G SchaererDepartment of Biological Sciences, Michigan Technological University, Houghton, MI 49931, USA.
Isaac BigcraftDepartment of Biological Sciences, Michigan Technological University, Houghton, MI 49931, USA.
Terry C HazenDepartment of Civil and Environmental Engineering, University of Tennessee, Knoxville, TN 37996, USA.ORCID 0000-0002-2536-9993
Stephen M TechtmannDepartment of Biological Sciences, Michigan Technological University, Houghton, MI 49931, USA.ORCID 0000-0002-8702-9329

Funding

Merck KGaA Merck Future Insight Prize
6 · The paper itself

Abstract

Marine cold seeps are unique ecological niches characterized by the emergence of hydrocarbons, including methane, which fosters diverse microbial communities. This study investigates the diversity and distribution of hydrocarbon-degrading genes and organisms in sediments from the Caspian and Mediterranean Seas, utilizing 16S rRNA and metagenomic sequencing to elucidate microbial community structure and functional potential. Our findings reveal distinct differences in hydrocarbon degrading gene profiles between the two seas, with pathways for aerobic and anaerobic hydrocarbon degradation co-existing in sediments from both basins. Aerobic pathways predominate in the surface sediments of the Mediterranean Sea, while anaerobic pathways are favored in the surface sediments of the anoxic Caspian Sea. Additionally, sediment depths significantly influence microbial diversity, with variations in gene abundance and community composition observed at different depths. Aerobic hydrocarbon-degrading genes decrease in diversity with depth in the Mediterranean Sea, whereas the diversity of aerobic hydrocarbon-degrading genes increases with depth in the Caspian Sea. These results enhance our understanding of microbial ecology in cold seep environments and have implications for bioremediation practices targeting hydrocarbon pollutants in marine ecosystems.

Indexed as

16S rRNA analysisaerobic degradationanaerobic degradationbioremediationCaspian Seacold seepshydrocarbon-degrading genesMediterranean Seametagenomic sequencingmicrobial diversity

Identifiers

PMID40005589
PMCPMC11857318

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.