Evidence map›Paper›PMID 40005204›Full record

ArticleMolecules (Basel, Switzerland)2025

Unveiling the pH-Responsive Mechanisms of the Carbon Dot-Proximicin-A Peptide Conjugate for Targeted Cancer Therapy Using Density Functional Theory.

Azeez Ahamed, Piumantha Samaranayake, Visal de Silva, Muhammad Raziq Rahimi Kooh, Nadeesha Wickramage, Indu G Rajapaksha, Roshan Thotagamuge

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Azeez AhamedDepartment of Physics, Faculty of Science, University of Ruhuna, Matara 81000, Sri Lanka.ORCID 0009-0005-8289-5016
Piumantha SamaranayakeDepartment of Physics, Faculty of Science, University of Ruhuna, Matara 81000, Sri Lanka.ORCID 0009-0004-6265-8446
Visal de SilvaDepartment of Physics, Faculty of Science, University of Ruhuna, Matara 81000, Sri Lanka.ORCID 0009-0007-3680-9513
Muhammad Raziq Rahimi KoohCentre for Advanced Material and Energy Sciences, Universiti Brunei Darussalam, Jalan Tungku Link, Gadong BE1410, Brunei.ORCID 0000-0001-7974-3162
Nadeesha WickramageDepartment of Physics, Faculty of Science, University of Ruhuna, Matara 81000, Sri Lanka.ORCID 0000-0001-7760-3537
Indu G RajapakshaDepartment of Basic Sciences, Faculty of Allied Health Sciences, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka.ORCID 0000-0002-4403-7177
Roshan ThotagamugeDepartment of Optometry, Faculty of Allied Health Sciences, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka.ORCID 0000-0002-7931-199X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study investigates the pH-responsive dissociation mechanism of carbon dot (CD) conjugated with the anticancer peptide proximicin-A (PROXI) using density functional theory (DFT) simulations. The CD@PROXI system, designed for targeted cancer therapy, releases the drug in acidic environments typical of cancer sites. DFT simulations, with the B3LYP-D3BJ functional and 6-311G (d, p) basis set, optimized the conjugate's geometry under neutral and acidic conditions. The focus was on the pH-sensitive C=N bond, existing in two protonation states. Key parameters evaluated included the HOMO-LUMO gap, bond length, IR spectroscopy, non-covalent interaction (NCI), electron localization function (ELF), density of states (DOSs), and electrostatic potential (ESP). Under neutral pH, the system showed stability with a HOMO-LUMO gap of 3.22 eV, indicating low reactivity. In acidic pH, this gap decreased to 0.40 eV, suggesting higher reactivity and potential for drug release. IR spectroscopy indicated weakened C=N bonds in acidic conditions, with bond length increasing from 1.288 Å to 1.324 Å. NCI analysis revealed increased van der Waals interactions, supporting bond weakening. ELF analysis showed electron localization at reactive sites, while DOS profiles and ESP maps highlighted distinct electronic states and potential dissociation regions in acidic conditions. These findings confirm the potential of CD@PROXI for targeted cancer therapy, with drug release triggered by the acidic tumor microenvironment.

Indexed as

Antineoplastic AgentsCarbonNeoplasmsPeptidesQuantum DotsDensity Functional TheoryHumansHydrogen-Ion ConcentrationAntineoplastic AgentsCarbonPeptidescarbon dots and proximicin-A peptidedensity functional theorytargeted drug delivery

Identifiers

PMID40005204
PMCPMC11858495

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.