Evidence map›Paper›PMID 40004112›Full record

ArticleInternational journal of molecular sciences2025

Comprehensive Bioinformatics Analysis of Glycosylation-Related Genes and Potential Therapeutic Targets in Colorectal Cancer.

Po-Kai Chuang, Kai-Fu Chang, Chih-Hsuan Chang, Ting-Yu Chen, Yueh-Jung Wu, Hui-Ru Lin, Chi-Jen Wu, Cheng-Chun Wu, Yu-Cheng Ho, Chih-Chun Lin and 4 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Pharmaceuticals (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Recent Advances in Anti-Cancer Drugs.International journal of molecular sciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Po-Kai ChuangInstitute of Biomedical Sciences, National Sun Yat-sen University, Kaohsiung 80424, Taiwan.ORCID 0000-0003-2585-3299
Kai-Fu ChangMedical Laboratory, Medical Education and Research Center, Kaohsiung Armed Forces General Hospital, Kaohsiung 80284, Taiwan.
Chih-Hsuan ChangInstitute of Biomedical Sciences, National Sun Yat-sen University, Kaohsiung 80424, Taiwan.
Ting-Yu ChenInstitute of Biomedical Sciences, National Sun Yat-sen University, Kaohsiung 80424, Taiwan.
Yueh-Jung WuDivision of Colorectal Surgery, Department of Surgery, Kaohsiung Armed Forces General Hospital, Kaohsiung 80284, Taiwan.
Hui-Ru LinInstitute of Medical Science and Technology, National Sun Yat-sen University, Kaohsiung 80424, Taiwan.
Chi-Jen WuNursing Department, Kaohsiung Armed Forces General Hospital, Kaohsiung 80284, Taiwan.ORCID 0000-0003-2160-8472
Cheng-Chun WuSchool of Medicine, College of Medicine, I-Shou University, Kaohsiung 82445, Taiwan.ORCID 0000-0002-7084-9208
Yu-Cheng HoSchool of Medicine, College of Medicine, I-Shou University, Kaohsiung 82445, Taiwan.
Chih-Chun LinDepartment of Physical Therapy, I-Shou University, Kaohsiung 824005, Taiwan.
Chien-Han YuanMedical Laboratory, Medical Education and Research Center, Kaohsiung Armed Forces General Hospital, Kaohsiung 80284, Taiwan.
Chih-Yang WangPh.D. Program for Cancer Molecular Biology and Drug Discovery, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0002-4137-5074
Yung-Kuo LeeMedical Laboratory, Medical Education and Research Center, Kaohsiung Armed Forces General Hospital, Kaohsiung 80284, Taiwan.ORCID 0000-0003-1638-8049
Tung-Yuan ChenDivision of Colorectal Surgery, Department of Surgery, Kaohsiung Armed Forces General Hospital, Kaohsiung 80284, Taiwan.

Funding

Kaohsiung Armed Forces General Hospital KAFGH_D_113019, KAFGH_D_114022, and KAFGH_D_114053National Science and Technology Council (NSTC) of Taiwan 113-2320-B-393-001
6 · The paper itself

Abstract

Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide, characterized by high incidence and poor survival rates. Glycosylation, a fundamental post-translational modification, influences protein stability, signaling, and tumor progression, with aberrations implicated in immune evasion and metastasis. This study investigates the role of glycosylation-related genes (Glycosylation-RGs) in CRC using machine learning and bioinformatics. Data from The Cancer Genome Atlas (TCGA) and the Molecular Signatures Database (MSigDB) were analyzed to identify 67 differentially expressed Glycosylation-RGs. These genes were used to classify CRC patients into two subgroups with distinct survival outcomes, highlighting their prognostic value. Weighted gene coexpression network analysis (WGCNA) revealed key modules associated with CRC traits, including pathways like glycan biosynthesis and PI3K-Akt signaling. A machine-learning-based prognostic model demonstrated strong predictive performance, stratifying patients into high- and low-risk groups with significant survival differences. Additionally, the model revealed correlations between risk scores and immune cell infiltration, providing insights into the tumor immune microenvironment. Drug sensitivity analysis identified potential therapeutic agents, including Trametinib, SCH772984, and Oxaliplatin, showing differential efficacy between risk groups. These findings enhance our understanding of glycosylation in CRC, identifying it as a critical factor in disease progression and a promising target for future therapeutic strategies.

Indexed as

Colorectal NeoplasmsComputational BiologyBiomarkers, TumorGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksGlycosylationHumansMachine LearningPrognosisSignal TransductionTumor MicroenvironmentBiomarkers, Tumorbioinformaticscolorectal cancerdrug sensitivity analysisglycosylationimmune microenvironmentmachine learningprognostic model

Identifiers

PMID40004112
PMCPMC11855181

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.