Evidence map›Paper›PMID 40000831›Full record

ArticleNature genetics2025

Cancer-independent somatic mutation of the wild-type NF1 allele in normal tissues in neurofibromatosis type 1.

Thomas R W Oliver, Andrew R J Lawson, Henry Lee-Six, Anna Tollit, Hyunchul Jung, Yvette Hooks, Rashesh Sanghvi, Matthew D Young, Timothy M Butler, Pantelis A Nicola and 15 more

Abstract read
In one paragraph

Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Pervasive Somatic Mutations inbioRxiv : the preprint server for biology · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Molecular Basis of Fracture Pseudarthrosis Associated with Neurofibromatosis Type 1.Journal of the Pediatric Orthopaedic Society of North America · 2025
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Thomas R W Oliver *Wellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0003-4306-0102
Andrew R J Lawson *Wellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0003-3592-1005
Henry Lee-Six *Wellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0003-4831-8088
Anna TollitResearch Department of Pathology, University College London, London, UK.
Hyunchul JungWellcome Sanger Institute, Hinxton, UK.
Yvette HooksWellcome Sanger Institute, Hinxton, UK.
Rashesh SanghviWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-7703-9216
Matthew D YoungWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0003-0937-5290
Timothy M ButlerWellcome Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0001-5803-1035
Pantelis A NicolaWellcome Sanger Institute, Hinxton, UK.
Taryn D TregerWellcome Sanger Institute, Hinxton, UK.
Stefanie V LensingWellcome Sanger Institute, Hinxton, UK.
G A Amos BurkeCambridge University Hospitals NHS Foundation Trust, Cambridge, UK.ORCID http://orcid.org/0000-0003-2671-9972
Kristian AquilinaGreat Ormond Street Hospital for Children NHS Foundation Trust, London, UK.
Ulrike LöbelGreat Ormond Street Hospital for Children NHS Foundation Trust, London, UK.
Isidro Cortes-CirianoEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.ORCID http://orcid.org/0000-0002-2036-494X
Darren HargraveGreat Ormond Street Hospital for Children NHS Foundation Trust, London, UK.
Mette JorgensenGreat Ormond Street Hospital for Children NHS Foundation Trust, London, UK.
Flora A JessopCambridge University Hospitals NHS Foundation Trust, Cambridge, UK.
Tim H H CoorensBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-5826-3554
Adrienne M FlanaganResearch Department of Pathology, University College London, London, UK.ORCID http://orcid.org/0000-0002-2832-1303
Kieren AllinsonCambridge University Hospitals NHS Foundation Trust, Cambridge, UK. kallinson@nhs.net.ORCID http://orcid.org/0000-0002-0779-7337
Inigo MartincorenaWellcome Sanger Institute, Hinxton, UK. im3@sanger.ac.uk.ORCID http://orcid.org/0000-0003-1122-4416
Thomas S JacquesGreat Ormond Street Hospital for Children NHS Foundation Trust, London, UK. t.jacques@ucl.ac.uk.ORCID http://orcid.org/0000-0002-7833-2158
Sam BehjatiWellcome Sanger Institute, Hinxton, UK. sb31@sanger.ac.uk.ORCID http://orcid.org/0000-0002-6600-7665

Funding

Brain Tumour Charity GN-000382Brain Tumour Charity GN-000707Wellcome TrustWellcome Trust 206194Wellcome Trust (Wellcome) 108413/A/15/DWellcome Trust (Wellcome) 223135/Z/21/Z
6 · The paper itself

Abstract

Cancer predisposition syndromes mediated by recessive cancer genes generate tumors via somatic variants (second hits) in the unaffected allele. Second hits may or may not be sufficient for neoplastic transformation. Here we performed whole-genome and whole-exome sequencing on 479 tissue biopsies from a child with neurofibromatosis type 1, a multisystem cancer-predisposing syndrome mediated by constitutive monoallelic NF1 inactivation. We identified multiple independent NF1 driver variants in histologically normal tissues, but not in 610 biopsies from two nonpredisposed children. We corroborated this finding using targeted duplex sequencing, including a further nine adults with the same syndrome. Overall, truncating NF1 mutations were under positive selection in normal tissues from individuals with neurofibromatosis type 1. We demonstrate that normal tissues in neurofibromatosis type 1 commonly harbor second hits in NF1, the extent and pattern of which may underpin the syndrome's cancer phenotype.

Indexed as

Genes, Neurofibromatosis 1MutationNeoplasmsNeurofibromatosis 1Neurofibromin 1AdultAllelesChildExome SequencingFemaleGenetic Predisposition to DiseaseHumansMaleNeurofibromin 1NF1 protein, human

Identifiers

PMID40000831
PMCPMC11906363

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.