Evidence map›Paper›PMID 39999423›Full record

ArticleJournal of the American Chemical Society2025

Bespoke Activity-Based Probes Reveal that the

Gijs Ruijgrok, Wendy A Offen, Isabelle B Pickles, Deepa Raju, Thanasis Patsos, Casper de Boer, Tim Ofman, Joep Rompa, Daan van Oord, Eleanor J Dodson and 9 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Gijs RuijgrokLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.
Wendy A OffenDepartment of Chemistry, The University York, Heslington, York YO10 5DD, United Kingdom.
Isabelle B PicklesDepartment of Chemistry, The University York, Heslington, York YO10 5DD, United Kingdom.ORCID 0000-0002-8495-5570
Deepa RajuMolecular Medicine, Research Institute, The Hospital for Sick Children, Toronto, Ontario M5G 0A4, Canada.
Thanasis PatsosLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.
Casper de BoerLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.
Tim OfmanLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.
Joep RompaLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.
Daan van OordLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.
Eleanor J DodsonDepartment of Chemistry, The University York, Heslington, York YO10 5DD, United Kingdom.
Alexander BeekersLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.
Thijs VoskuilenLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.
Michela FerrariLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.
Liang WuDepartment of Chemistry, The University York, Heslington, York YO10 5DD, United Kingdom.ORCID 0000-0003-0294-7065
Antonius P A JanssenLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.ORCID 0000-0003-4203-261X
Jeroen D C CodéeLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.ORCID 0000-0003-3531-2138
P Lynne HowellMolecular Medicine, Research Institute, The Hospital for Sick Children, Toronto, Ontario M5G 0A4, Canada.
Gideon J DaviesDepartment of Chemistry, The University York, Heslington, York YO10 5DD, United Kingdom.ORCID 0000-0002-7343-776X
Herman S OverkleeftLeiden Institute of Chemistry, Leiden University, 2300 RA Leiden, The Netherlands.ORCID 0000-0001-6976-7005

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During infection, the human opportunistic pathogen Pseudomonas aeruginosa forms protective biofilms, whose matrix consists of proteins, nucleic acids, and polysaccharides such as alginate, Psl, and Pel. Psl, a polymeric pentasaccharide composed of mannose, rhamnose, and glucose, is produced during the early stages of biofilm formation, serving as a protective barrier against antibiotics and the immune system. The Psl biosynthesis gene cluster, besides encoding various glycosyltransferases, also includes an endoglycosidase, PslG. Here, we show, by activity-based protein profiling, structural studies on enzyme-inhibitor complexes, and defined substrate processing, that PslG is not, as previously suggested, an endo-β-mannosidase but instead a retaining endo-β-glucosidase. This insight allows the design of both competitive and covalent PslG inhibitors, as we show for repeating pentasaccharide mimetics featuring either a reducing end deoxynojirimycin or cyclophellitol moiety. This work provides valuable tools to deepen the understanding of Psl biosynthesis, its function in biofilm formation, and its contribution to antibiotic resistance. We demonstrate the enzyme's actual endo-β-glucosidase activity, a means to monitor PslG activity in

Indexed as

CellulaseGlycoside HydrolasesPseudomonas aeruginosaEnzyme InhibitorsCellulaseEnzyme InhibitorsGlycoside Hydrolases

Identifiers

PMID39999423
PMCPMC11912335

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.