Evidence map›Paper›PMID 39998731›Full record

ArticleGeroScience2025

SenSkin™: a human skin-specific cellular senescence gene set.

Saranya P Wyles, Grace T Yu, Clarisse Ganier, Tamar Tchkonia, Magnus D Lynch, George A Kuchel, James L Kirkland

Abstract read
In one paragraph

Article in GeroScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. SkinspanMayo Clinic proceedings · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Saranya P Wyles *Department of Dermatology, Mayo Clinic, 200 First Street SW, Rochester, MN, USA. wyles.saranya@mayo.edu.
Grace T Yu *Mayo Clinic Medical Scientist Training Program, Mayo Clinic, Rochester, MN, USA.
Clarisse GanierImmunology Department, Metaorganism Unit, Institut Pasteur, Paris, France.
Tamar TchkoniaCenter for Gerotherapeutics, Division of Endocrinology and Metabolism, Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Magnus D LynchCentre for Gene Therapy and Regenerative Medicine, King's College London, Guy's Hospital, London, UK.
George A KuchelUConn Center on Aging, University of Connecticut, Farmington, CT, USA.
James L KirklandCenter for Gerotherapeutics, Division of Endocrinology and Metabolism, Department of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA.

Funding

The KAPP-Sen Tissue Mapping Center CollaborativeU54AG075941 · NIA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GAROVIC, VESNA D, KUCHEL, GEORGE A · 2021 to 2025
$13.8M
Research Education ComponentP30AG067988 · NIA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Richard H Fortinsky, GEORGE A KUCHEL · 2021 to 2026
$9.5M
Effect of Aging on Preadipocyte DifferentiationR37AG013925 · NIA · MAYO CLINIC ROCHESTER · PI KIRKLAND, JAMES L. · 2016 to 2025
$6.6M
Translational Geroscience NetworkR33AG061456 · NIA · MAYO CLINIC ROCHESTER · PI JAMES L. KIRKLAND, STEPHEN B. KRITCHEVSKY · 2019 to 2026
$6.2M
MSTP at Mayo Clinic RochesterT32GM145408 · NIGMS · MAYO CLINIC ROCHESTER · PI SCOTT H KAUFMANN, LISA A SCHIMMENTI · 2023 to 2026
$4.7M
COVID-FIS: A PHASE 2 PLACEBO-CONTROLLED PILOT STUDY IN COVID-19 OF FISETIN TO ALLEVIATE DYSFUNCTION AND EXCESSIVE INFLAMMATORY RESPONSE IN OLDER ADULTS IN NURSING HOMESR01AG072301 · NIA · MAYO CLINIC ROCHESTER · PI PIGNOLO, ROBERT JOHN · 2020 to 2024
$1.9M
Foundation for the National Institutes of Health GM145408Foundation for the National Institutes of Health P30AG067988Foundation for the National Institutes of Health R01AG072301Foundation for the National Institutes of Health R33AG61456Foundation for the National Institutes of Health R37AG13925Foundation for the National Institutes of Health U54AG075941Hevolution Foundation HF-GRO-23-1199148-3Hevolution Foundation HF-GRO-23-1199252-26Mary Kay Inc. 1128845NIA NIH HHS P30 AG067988NIA NIH HHS R01 AG072301NIA NIH HHS R33 AG061456NIA NIH HHS R37 AG013925NIA NIH HHS U54 AG075941NIGMS NIH HHS T32 GM145408Wellcome TrustWellcome Trust 211276/E/18/Z
6 · The paper itself

Abstract

Cellular senescence gene sets have been leveraged to overcome the inadequate sensitivity or specificity of single markers. However, growing evidence of heterogeneity among tissues in senescent cell phenotypes and gene expression profiles has highlighted the need for tissue-specific gene sets. SenSkin™ was curated by an expert review of literature on cellular senescence in the skin and characterized with pathway analysis. To validate SenSkin™, it was evaluated for enrichment with chronological aging in a bulk RNA-sequencing (RNA-seq) dataset and a pseudobulk RNA-seq dataset. Further, changes to SenSkin™ in different skin cell types with photoaging were evaluated in two single-cell RNA-seq datasets. SenSkin™ predominantly included genes related to the senescence-associated secretory phenotype (SASP), which were associated with metabolism and multiple aspects of immune responses. SenSkin™ was more enriched in chronologically aged skin than other commonly used cellular senescence and aging gene sets. In scRNA-seq, SenSkin™ displayed significant upregulation due to photoaging in ten skin cell types. In conclusion, SenSkin™ is a human skin-specific senescence gene set validated in chronological aging and photoaging, which may be more effective at detecting senescent cells in the skin than non-tissue-specific gene sets.

Indexed as

Cellular SenescenceSkinSkin AgingGene Expression ProfilingHumansRNA-SeqSenescence-Associated Secretory PhenotypeSequence Analysis, RNATranscriptomeBioinformaticsCellular senescenceSkin

Identifiers

PMID39998731
PMCPMC12181445

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.