Evidence map›Paper›PMID 39998604›Full record

ArticleCellular and molecular life sciences : CMLS2025

DNA methylation patterns contribute to changes of cellular differentiation pathways in leukocytes with LOY from patients with Alzheimer´s disease.

Marcin Jąkalski, Bożena Bruhn-Olszewska, Edyta Rychlicka-Buniowska, Hanna Davies, Daniil Sarkisyan, Maciej Siedlar, Jarosław Baran, Kazimierz Węglarczyk, Janusz Jaszczynski, Janusz Ryś and 6 more

Abstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Marcin Jąkalski *3P-Medicine Laboratory, Medical University of Gdańsk, Dębinki 7, 80-211, Gdańsk, Poland. marcin.jakalski@gumed.edu.pl.ORCID http://orcid.org/0000-0002-5481-9148
Bożena Bruhn-Olszewska *Department of Immunology, Genetics and Pathology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden. bozena.bruhn-olszewska@igp.uu.se.ORCID http://orcid.org/0000-0003-2141-0247
Edyta Rychlicka-Buniowska3P-Medicine Laboratory, Medical University of Gdańsk, Dębinki 7, 80-211, Gdańsk, Poland.
Hanna DaviesDepartment of Immunology, Genetics and Pathology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Daniil SarkisyanDepartment of Immunology, Genetics and Pathology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Maciej SiedlarDepartment of Clinical Immunology, Institute of Paediatrics, Jagiellonian University, Collegium Medicum, Kraków, Poland.
Jarosław BaranDepartment of Clinical Immunology, Institute of Paediatrics, Jagiellonian University, Collegium Medicum, Kraków, Poland.
Kazimierz WęglarczykDepartment of Clinical Immunology, Institute of Paediatrics, Jagiellonian University, Collegium Medicum, Kraków, Poland.
Janusz JaszczynskiDepartment of Urology, Maria Skłodowska-Curie National Research Institute of Oncology, Kraków, Poland.
Janusz RyśDepartment of Tumor Pathology, Maria Skłodowska-Curie National Research Institute of Oncology, Kraków, Poland.
Vilmantas GedraitisDepartment of Public Health and Caring Sciences/Geriatrics, Uppsala University, Uppsala, Sweden.
Natalia Filipowicz3P-Medicine Laboratory, Medical University of Gdańsk, Dębinki 7, 80-211, Gdańsk, Poland.
Alicja Klich-RączkaDepartment and Clinic of Internal Medicine and Gerontology, Jagiellonian University, Collegium Medicum, Kraków, Poland.
Lena KilanderDepartment of Public Health and Caring Sciences/Geriatrics, Uppsala University, Uppsala, Sweden.
Martin IngelssonDepartment of Public Health and Caring Sciences/Geriatrics, Uppsala University, Uppsala, Sweden.
Jan P Dumanski *3P-Medicine Laboratory, Medical University of Gdańsk, Dębinki 7, 80-211, Gdańsk, Poland. jan.dumanski@igp.uu.se.ORCID http://orcid.org/0000-0002-1489-1452

Funding

Fundacja na rzecz Nauki Polskiej MAB/2018 /6Hjärt-Lungfonden 20210051Vetenskapsrådet 2020-02010
6 · The paper itself

Abstract

Alzheimer's disease (AD) is a common and increasing societal problem due to the extending human lifespan. In males, loss of chromosome Y (LOY) in leukocytes is strongly associated with AD. We studied here DNA methylation and RNA expression in sorted monocytes and granulocytes with and without LOY from male AD patients. Through multi-omic analysis, we identified new candidate genes along with those previously associated with AD. Global analyses of DNA methylation in samples with LOY vs. normal state showed that hypomethylation dominated both in granulocytes and monocytes. Our findings highlight LOY-related differences in DNA methylation that occur in gene regulatory regions. Specifically, we observed alterations in key genes involved in leukocyte differentiation: FLI1, involved in early hematopoiesis; RUNX1, essential for blood cell development; RARA, regulating gene expression in response to retinoic acid; CANX, crucial for protein folding; CEBPB, a transcription factor important for immune responses; and MYADM, implicated in cell adhesion and migration. Moreover, protein-protein interaction analysis in granulocytes identified that products of two of these genes, CANX and CEBPB, are key hub proteins. This research underscores the potential of multi-omic approach in pure hematopoietic cell populations to uncover the molecular underpinnings of AD. Finally, our results link previous analysis showing impact of LOY on leukocyte differentiation, LOY-associated transcriptional dysregulation and GWAS studies of LOY.

Indexed as

Alzheimer DiseaseCell DifferentiationDNA MethylationLeukocytesAgedAged, 80 and overCCAAT-Enhancer-Binding Protein-betaCore Binding Factor Alpha 2 SubunitGranulocytesHumansMaleMonocytesCCAAT-Enhancer-Binding Protein-betaCEBPB protein, humanCore Binding Factor Alpha 2 SubunitAlzheimer’s diseaseCpG dinucleotide methylationDNA methylationGene expression regulationLoss of chromosome Y

Identifiers

PMID39998604
PMCPMC11861481

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.