Evidence map›Paper›PMID 39998369›Full record

ArticleRadiology2025

Assessing Completeness of Clinical Histories Accompanying Imaging Orders Using Adapted Open-Source and Closed-Source Large Language Models.

David B Larson, Arogya Koirala, Lina Y Cheuy, Magdalini Paschali, Dave Van Veen, Hye Sun Na, Matthew B Petterson, Zhongnan Fang, Akshay S Chaudhari

Abstract read
In one paragraph

Article in Radiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

David B LarsonDepartment of Radiology, Stanford University School of Medicine, 453 Quarry Rd, MC 5659, Stanford, CA 94304.ORCID 0000-0002-1157-5905
Arogya KoiralaDepartment of Radiology, Stanford University School of Medicine, 453 Quarry Rd, MC 5659, Stanford, CA 94304.ORCID 0009-0007-0304-5350
Lina Y CheuyDepartment of Radiology, Stanford University School of Medicine, 453 Quarry Rd, MC 5659, Stanford, CA 94304.ORCID 0000-0002-1216-9001
Magdalini PaschaliDepartment of Radiology, Stanford University School of Medicine, 453 Quarry Rd, MC 5659, Stanford, CA 94304.ORCID 0000-0003-4967-3137
Dave Van VeenDepartment of Electrical Engineering, Stanford University, Stanford, Calif.ORCID 0000-0001-9312-1773
Hye Sun NaDepartment of Radiology, Stanford University School of Medicine, 453 Quarry Rd, MC 5659, Stanford, CA 94304.ORCID 0009-0008-5557-8850
Matthew B PettersonDepartment of Radiology, Stanford University School of Medicine, 453 Quarry Rd, MC 5659, Stanford, CA 94304.ORCID 0000-0003-3003-7835
Zhongnan FangDepartment of Radiology, Stanford University School of Medicine, 453 Quarry Rd, MC 5659, Stanford, CA 94304.ORCID 0000-0003-3463-7766
Akshay S ChaudhariDepartment of Radiology, Stanford University School of Medicine, 453 Quarry Rd, MC 5659, Stanford, CA 94304.ORCID 0000-0002-3667-6796

Funding

Rapid MRI for Evaluation of OsteoarthritisR01EB002524 · NIBIB · STANFORD UNIVERSITY · PI Akshay Chaudhari, Garry E Gold · 2003 to 2026
$10.1M
TR&D Project 3: OpenSim for PredictionP41EB027060 · NIBIB · STANFORD UNIVERSITY · PI SCOTT L DELP · 2020 to 2026
$9.7M
RADX TECH - CERES NANOSCIENCE INC NANOTRAP PARTICLE MANUFACTURING75N92020C00021 · NHLBI · CERES NANOSCIENCES, LLLP · PI DUNLAP, ROSS · 2021 to 2021
$4.0M
Rapid Low-Cost Quantitative 3D MRI and Gait Assessment of the KneeR01AR077604 · NIAMS · STANFORD UNIVERSITY · PI HARGREAVES, BRIAN ANDREW · 2020 to 2024
$3.2M
Imaging of Joint Response to Physiological Stress with Age, Sex and in OsteoarthritisR01AR079431 · NIAMS · STANFORD UNIVERSITY · PI Feliks Kogan · 2022 to 2026
$2.9M
Opportunistic Atherosclerotic Cardiovascular Disease Risk Estimation at Abdominal CTs with Robust and Unbiased Deep LearningR01HL167974 · NHLBI · STANFORD UNIVERSITY · PI Imon Banerjee, Akshay Chaudhari · 2023 to 2026
$2.4M
NHLBI NIH HHS 75N92020C00008NHLBI NIH HHS 75N92020C00021NHLBI NIH HHS R01 HL167974NIAMS NIH HHS R01 AR077604NIAMS NIH HHS R01 AR079431NIBIB NIH HHS P41 EB027060NIBIB NIH HHS R01 EB002524
6 · The paper itself

Abstract

Background Incomplete clinical histories are a well-known problem in radiology. Previous dedicated quality improvement efforts focusing on reproducible assessments of the completeness of free-text clinical histories have relied on tedious manual analysis. Purpose To adapt and evaluate open-source and closed-source large language models (LLMs) for their ability to automatically extract clinical history elements within imaging orders and to use the best-performing adapted open-source model to assess the completeness of a large sample of clinical histories as a benchmark for clinical practice. Materials and Methods This retrospective single-site study used previously extracted information accompanying CT, MRI, US, and radiography orders from August 2020 to May 2022 at an adult and pediatric emergency department of a 613-bed tertiary academic medical center. Two open-source (Llama 2-7B [Meta], Mistral-7B [Mistral AI]) and one closed-source (GPT-4 Turbo [OpenAI]) LLMs were adapted using prompt engineering, in-context learning, and fine-tuning (open-source only) to extract the elements "past medical history," "what," "when," "where," and "clinical concern" from clinical histories. Model performance, interreader agreement using Cohen κ (none to slight, 0.01-0.20; fair, 0.21-0.40; moderate, 0.41-0.60; substantial, 0.61-0.80; almost perfect, 0.81-1.00), and semantic similarity between the models and the adjudicated manual annotations of two board-certified radiologists with 16 and 3 years of postfellowship experience, respectively, were assessed using accuracy, Cohen κ, and BERTScore, an LLM metric that quantifies how well two pieces of text convey the same meaning; 95% CIs were also calculated. The best-performing open-source model was then used to assess completeness on a large dataset of unannotated clinical histories. Results A total of 50 186 clinical histories were included (794 training, 150 validation, 300 initial testing, 48 942 real-world application). Of the two open-source models, Mistral-7B outperformed Llama 2-7B in assessing completeness and was further fine-tuned. Both Mistral-7B and GPT-4 Turbo showed substantial overall agreement with radiologists (mean κ, 0.73 [95% CI: 0.67, 0.78] to 0.77 [95% CI: 0.71, 0.82]) and adjudicated annotations (mean BERTScore, 0.96 [95% CI: 0.96, 0.97] for both models;

Indexed as

Diagnostic ImagingMedical History TakingNatural Language ProcessingHumansLarge Language ModelsQuality ImprovementRadiology Information SystemsRetrospective Studies

Identifiers

PMID39998369
PMCPMC11868845

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.