Evidence map›Paper›PMID 39998217›Full record

ArticlemBio2025

Inter-protomer opening cooperativity of envelope trimers positively correlates with HIV-1 entry stoichiometry.

Revansiddha H Katte, Wang Xu, Yang Han, Xinyu Hong, Maolin Lu

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Revansiddha H KatteDepartment of Cellular and Molecular Biology, School of Medicine, The University of Texas at Tyler Health Science Center, Tyler, Texas, USA.ORCID 0000-0002-3844-8797
Wang XuDepartment of Cellular and Molecular Biology, School of Medicine, The University of Texas at Tyler Health Science Center, Tyler, Texas, USA.
Yang HanDepartment of Cellular and Molecular Biology, School of Medicine, The University of Texas at Tyler Health Science Center, Tyler, Texas, USA.
Xinyu HongDepartment of Cellular and Molecular Biology, School of Medicine, The University of Texas at Tyler Health Science Center, Tyler, Texas, USA.ORCID 0000-0002-2419-4554
Maolin LuDepartment of Cellular and Molecular Biology, School of Medicine, The University of Texas at Tyler Health Science Center, Tyler, Texas, USA.ORCID 0000-0002-8099-6447

Funding

Project 3 - Dynamics of latent HIV-1 reservoirs: High resolution antigenic mapping and strategies to block reboundU54AI170752 · NIAID · DUKE UNIVERSITY · PI Priyamvada Acharya · 2022 to 2026
$32.0M
The role of conformational dynamics of enveloped virus spike proteins in cell entryR35GM151169 · NIGMS · UNIVERSITY OF TEXAS HLTH CTR AT TYLER · PI Maolin Lu · 2023 to 2026
$1.5M
Probing real-time conformational dynamics and allosteric cooperativity of the HIV-1 envelope glycoprotein during virus entryR01AI181600 · NIAID · UNIVERSITY OF TEXAS HLTH CTR AT TYLER · PI Maolin Lu · 2024 to 2026
$1.3M
HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI181600, U54AI170752HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM151169NIAID NIH HHS R01 AI181600NIAID NIH HHS U54 AI170752NIGMS NIH HHS R35 GM151169
6 · The paper itself

Abstract

HIV-1 entry to host cells is fulfilled by fusion, mediated by surface glycoprotein envelope (Env) trimers upon interaction with host receptors. The entry stoichiometry (T) defining the number of Env trimers required for fusion remains elusive. Stoichiometry was previously estimated using mathematical modeling of infectivity curves of pseudoviruses surface-decorated with heterotrimers containing wild-type and entry-deficient Env. Nevertheless, previous models rarely co-considered inter-protomer opening cooperativity (S, reflecting how CD4-induced conformational changes in one protomer affect the opening of adjacent protomers) and virion trimer number distributions, while experiments were limited to pseudoviruses. Here, we factored these two parameters into our models and included replication-competent virions. We provided simultaneous estimates of T and S under varying trimer number distributions and offered 2D stoichiometry maps for different Env strains. Our results depicted the interplay between viral infectivity and stoichiometry tuned by the number of trimers per virion. The estimates for all tested Env strains were prevalently higher (T ≥ 7 for BG505 or JR-FL, T ≥ 13 for NL4-3) than reported. A high degree of inter-protomer opening cooperativity was observed for the neutralization-sensitive NL4-3, while neutralization-resistant BG505 and JR-FL showed a low to intermediate degree. Entry stoichiometry and opening cooperativity were strikingly positive-correlated, implying tied inter-protomer and inter-Env cooperative interactions. Our findings provided an in-depth view of Env cooperativities during HIV-1 entry.IMPORTANCEThe sparsely distributed envelope (Env) trimers on the surface of HIV-1 work collaboratively to mediate viral entry into the host, the early step of infection. The number of interacting trimers with host receptors required for entry awaits elucidation. Here, we explored the cooperative interplay among and within Env trimers, shedding light on a previously overlooked dimension of HIV-1 entry. For the first time, we presented distributions of estimated parameters depicting the number of Env trimers and degrees of inter-protomer opening cooperativities using biologically relevant mathematic models combined with virion infectivity measurements. Our results demonstrated that the quantity of required functional trimers positively correlates with inter-protomer opening cooperativity, a feature conserved across various strains. Our findings underscore cooperative behavior as an inherent characteristic of Env dynamics during HIV-1 entry. These insights enhance our understanding of HIV-1 infection mechanisms and could inform strategies for developing effective inhibitors or neutralizing agents.

Indexed as

env Gene Products, Human Immunodeficiency VirusHIV-1Protein MultimerizationVirus InternalizationHIV InfectionsHumansVirionenv Gene Products, Human Immunodeficiency ViruscooperativityenvelopeHIV-1protomerstoichiometrytrimervirus entry

Identifiers

PMID39998217
PMCPMC11980385

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.