Evidence map›Paper›PMID 39995150›Full record

ReviewFEBS open bio2025

Beyond digital twins: the role of foundation models in enhancing the interpretability of multiomics modalities in precision medicine.

Sakhaa Alsaedi, Xin Gao, Takashi Gojobori

Abstract readReview
In one paragraph

Review in FEBS open bio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. AI-powered in silico twins: redefining precision medicine through simulation, personalization, and predictive healthcare.Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2025
    Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sakhaa AlsaediComputer Science, Division of Computer, Electrical and Mathematical Sciences and Engineering (CEMSE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Xin GaoComputer Science, Division of Computer, Electrical and Mathematical Sciences and Engineering (CEMSE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Takashi GojoboriComputer Science, Division of Computer, Electrical and Mathematical Sciences and Engineering (CEMSE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.ORCID https://orcid.org/0000-0001-7850-1743

Funding

Center of Excellence for Smart Health (KCSH) 5932Center of Excellence on Generative AI 5940King Abdullah University of Science and Technology BAS/1/1059-01-01King Abdullah University of Science and Technology (KAUST) Office of Research Administration (ORA) REI/1/5234-01-01King Abdullah University of Science and Technology (KAUST) Office of Research Administration (ORA) REI/1/5289-01-01King Abdullah University of Science and Technology (KAUST) Office of Research Administration (ORA) REI/1/5404-01-01King Abdullah University of Science and Technology (KAUST) Office of Research Administration (ORA) REI/1/5414-01-01King Abdullah University of Science and Technology (KAUST) Office of Research Administration (ORA) REI/1/5992-01-01King Abdullah University of Science and Technology (KAUST) Office of Research Administration (ORA) URF/1/4663-01-01
6 · The paper itself

Abstract

Medical digital twins (MDTs) are virtual representations of patients that simulate the biological, physiological, and clinical processes of individuals to enable personalized medicine. With the increasing complexity of omics data, particularly multiomics, there is a growing need for advanced computational frameworks to interpret these data effectively. Foundation models (FMs), large-scale machine learning models pretrained on diverse data types, have recently emerged as powerful tools for improving data interpretability and decision-making in precision medicine. This review discusses the integration of FMs into MDT systems, particularly their role in enhancing the interpretability of multiomics data. We examine current challenges, recent advancements, and future opportunities in leveraging FMs for multiomics analysis in MDTs, with a focus on their application in precision medicine.

Indexed as

Precision MedicineComputational BiologyGenomicsHumansMachine LearningMultiomicsbioinformaticsbiomedicinedigital twinsfoundation modelsLLMmultiomics

Identifiers

PMID39995150
PMCPMC12319712

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.