Evidence map›Paper›PMID 39994484›Full record

ArticleThe EMBO journal2025

The structure of basal body inner junctions from Tetrahymena revealed by electron cryo-tomography.

Sam Li, Jose-Jesus Fernandez, Marisa D Ruehle, Rachel A Howard-Till, Amy Fabritius, Chad G Pearson, David A Agard, Mark E Winey

Abstract read
In one paragraph

Article in The EMBO journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
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  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Sam LiDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, 94158, USA. samli@msg.ucsf.edu.ORCID http://orcid.org/0000-0002-0210-8192
Jose-Jesus FernandezNanomaterials and Nanotechnology Research Center (CINN-CSIC), Health Research Institute of Asturias (ISPA), 33011, Oviedo, Spain.ORCID http://orcid.org/0000-0003-2222-3355
Marisa D RuehleDepartment of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA.
Rachel A Howard-TillDepartment of Molecular and Cellular Biology, University of California Davis, Davis, CA, 95616, USA.
Amy FabritiusDepartment of Molecular and Cellular Biology, University of California Davis, Davis, CA, 95616, USA.
Chad G PearsonDepartment of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA.
David A AgardDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, 94158, USA. david.agard@czii.org.ORCID http://orcid.org/0000-0003-3512-695X
Mark E WineyDepartment of Molecular and Cellular Biology, University of California Davis, Davis, CA, 95616, USA. mwiney@ucdavis.edu.ORCID http://orcid.org/0000-0002-9028-9033

Funding

Structure & Mechanism: microtubule nucleation, centrosomes, phage cytoskeletonR35GM118099 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AGARD, DAVID A. · 2016 to 2022
$3.6M
Centriole assembly and function for centrosome and cilia biologyR35GM140813 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI CHAD G PEARSON · 2021 to 2026
$3.5M
MIPS (Microtubule Inner Proteins) function in cilia and basal bodiesR01GM127571 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI WINEY, MARK · 2018 to 2025
$2.5M
Glacios™ Cryo Transmission Electron Microscope with 200 kV XFEG opticsS10OD026881 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2019 to 2019
$1.8M
HHS | National Institutes of Health (NIH) GM118099HHS | National Institutes of Health (NIH) GM127571HHS | National Institutes of Health (NIH) GM140813NIGMS NIH HHS R01 GM127571NIGMS NIH HHS R35 GM118099NIGMS NIH HHS R35 GM140813NIH HHS S10 OD026881Spanish AEI/FEDER PID2022-139071NB-I00
6 · The paper itself

Abstract

The cilium is a microtubule-based eukaryotic organelle critical for many cellular functions. Its assembly initiates at a basal body and continues as an axoneme that projects out of the cell to form a functional cilium. This assembly process is tightly regulated. However, our knowledge of the molecular architecture and the mechanism of assembly is limited. By applying cryo-electron tomography, we obtained structures of the inner junction in three regions of the cilium from Tetrahymena: the proximal, the central core of the basal body, and the axoneme. We identified several protein components in the basal body. While a few proteins are distributed throughout the entire length of the organelle, many are restricted to specific regions, forming intricate local interaction networks in the inner junction and bolstering local structural stability. By examining the inner junction in a POC1 knockout mutant, we found the triplet microtubule was destabilized, resulting in a defective structure. Surprisingly, several axoneme-specific components were found to "infiltrate" into the mutant basal body. Our findings provide molecular insight into cilium assembly at the inner junctions, underscoring its precise spatial regulation.

Indexed as

Basal BodiesCiliaTetrahymenaTetrahymena thermophilaAxonemeCryoelectron MicroscopyElectron Microscope TomographyMicrotubulesProtozoan ProteinsProtozoan ProteinsAssemblyBasal BodyCentrioleCiliumElectron Cryo-tomography

Identifiers

PMID39994484
PMCPMC11961760

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.