Evidence map›Paper›PMID 39994216›Full record

ArticleNature communications2025

Endosomal trafficking participates in lipid droplet catabolism to maintain lipid homeostasis.

Wang Peng, Shu Chen, Jingyu Ma, Wenjie Wei, Naixin Lin, Jinchao Xing, Wenjing Guo, Heying Li, Liang Zhang, Kuiming Chan and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Rab27: Molecular switch of tumor exosome secretion (Review).International journal of molecular medicine · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. The CaCell reports. Medicine · 2026
    Article
  7. Article
  8. PathogenicHuman mutation · 2026
    Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Wang Peng *City University of Hong Kong Shenzhen Research Institute, Shenzhen, China.ORCID http://orcid.org/0000-0003-1824-2545
Shu Chen *City University of Hong Kong Shenzhen Research Institute, Shenzhen, China.
Jingyu MaDivision of Natural and Applied Sciences, Synear Molecular Biology Lab, Jiangsu Provincial University Key (Construction) Laboratory for Smart Diagnosis and Treatment of Lung Cancer, Duke Kunshan University, Kunshan, China.
Wenjie WeiCore Research Facilities, Southern University of Science and Technology, Shenzhen, China.ORCID http://orcid.org/0000-0002-5053-791X
Naixin LinCity University of Hong Kong Shenzhen Research Institute, Shenzhen, China.ORCID http://orcid.org/0000-0002-1169-7558
Jinchao XingCity University of Hong Kong Shenzhen Research Institute, Shenzhen, China.ORCID http://orcid.org/0000-0002-9017-2855
Wenjing GuoAnalysis and Testing Center, Guangzhou Institute of Biomedicine and Health (GIBH) Chinese Academy of Sciences, Guangzhou, China.ORCID http://orcid.org/0009-0001-6376-2702
Heying LiAnalysis and Testing Center, Guangzhou Institute of Biomedicine and Health (GIBH) Chinese Academy of Sciences, Guangzhou, China.
Liang ZhangCity University of Hong Kong Shenzhen Research Institute, Shenzhen, China.ORCID http://orcid.org/0000-0003-3100-8593
Kuiming ChanCity University of Hong Kong Shenzhen Research Institute, Shenzhen, China.ORCID http://orcid.org/0000-0001-6430-3340
Andrew YenDepartment of Biomedical Sciences, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-9802-7679
Guangyu ZhuCity University of Hong Kong Shenzhen Research Institute, Shenzhen, China. guangzhu@cityu.edu.hk.ORCID http://orcid.org/0000-0002-4710-7070
Jianbo YueCity University of Hong Kong Shenzhen Research Institute, Shenzhen, China. jianbo.yue@dukekunshan.edu.cn.ORCID http://orcid.org/0000-0001-6384-5447

Funding

National Science Foundation of China | National Natural Science Foundation of China-Yunnan Joint Fund (NSFC-Yunnan Joint Fund) 32070702
6 · The paper itself

Abstract

The interplay between lipid droplets (LDs) and endosomes remains unknown. Here, we screen and synthesize AP1-coumarin, an LD-specific probe, by conjugating a fluorescent dye coumarin to a triazine compound AP1. AP1-coumarin labels all stages of LDs in live cells and markedly induces the accumulation of enlarged RAB5-RAB7 double-positive intermediate endosomes. The AP1-coumarin-labeled LDs contact these intermediate endosomes, with some LDs even being engulfed in them. When LD biogenesis is inhibited, the ability of AP1-coumarin to label LDs is markedly reduced, and the accumulation of enlarged intermediate endosomes is abolished. Moreover, blocking the biogenesis of LDs decreases the number of late endosomes while increasing the number of early endosomes and inhibits the endosomal trafficking of low-density lipoprotein (LDL) and transferrin. Correspondingly, interference with RAB5 or RAB7, either through knockdown or using dominant-negative mutants, inhibits LD catabolism, whereas the expression of a RAB7 constitutively active mutant accelerates LD catabolism. Additionally, CCZ1 knockdown not only induces the accumulation of intermediate endosomes but also inhibits LD catabolism. These results collectively suggest that LDs and endosomes interact and influence each other's functions, and endosomal trafficking participates in the catabolic process of LDs to maintain lipid homeostasis.

Indexed as

EndosomesHomeostasisLipid DropletsLipid MetabolismAnimalsHeLa CellsHumansLipoproteins, LDLrab5 GTP-Binding Proteinsrab7 GTP-Binding Proteinsrab GTP-Binding ProteinsTransferrinLipoproteins, LDLrab5 GTP-Binding Proteinsrab7 GTP-Binding Proteinsrab7 GTP-binding proteins, humanrab GTP-Binding ProteinsTransferrin

Identifiers

PMID39994216
PMCPMC11850777

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.