Evidence map›Paper›PMID 39992716›Full record

ArticleCancer research2025

Longitudinal Profiling of Circulating Tumor DNA Reveals the Evolutionary Dynamics of Metastatic Prostate Cancer during Serial Therapy.

Yuehui Zhao, Naveen Ramesh, Ping Xu, Emi Sei, Min Hu, Shanshan Bai, Patricia Troncoso, Ana M Aparicio, Christopher J Logothetis, Paul G Corn and 2 more

Abstract read
In one paragraph

Article in Cancer research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Evolution of AR and Non-AR Alterations in ctDNA of Patients with Metastatic Prostate Cancer Treated in the Phase III Alliance A031201 Trial.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Trial
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yuehui ZhaoDepartment of Systems Biology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-9496-0023
Naveen RameshDepartment of Genetics, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0003-1394-3529
Ping XuDepartment of Systems Biology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-3771-4758
Emi SeiDepartment of Systems Biology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0003-1572-3319
Min HuDepartment of Genetics, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-5990-3816
Shanshan BaiDepartment of Systems Biology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0003-2439-6444
Patricia TroncosoDepartment of Pathology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-8241-1430
Ana M AparicioDepartment of Genitourinary Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0003-0900-0923
Christopher J LogothetisDepartment of Genitourinary Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-6365-1711
Paul G CornDepartment of Genitourinary Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-4106-6335
Nicholas E NavinDepartment of Systems Biology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-2106-8624
Amado J ZuritaDepartment of Genitourinary Medical Oncology, University of Texas MD Anderson Cancer Center, Houston, Texas.ORCID 0000-0002-3805-7307

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
DELINEATING THE EVOLUTION AND ECOLOGY OF CHEMORESISTANCE IN BREAST CANCER WITH SINGLE CELL GENOMICSR01CA236864 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI NAVIN, NICHOLAS · 2020 to 2024
$2.3M
INVESTIGATING TUMOR INITIATION AND INVASION IN PREMALIGNANT BREAST CANCER WITH SPATIAL SINGLE CELL GENOMICSR01CA240526 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI NAVIN, NICHOLAS · 2019 to 2023
$1.8M
Cancer Prevention and Research Institute of Texas (CPRIT) RP170067Cancer Prevention and Research Institute of Texas (CPRIT) RP180684National Cancer Institute (NCI) CA016672National Cancer Institute (NCI) RO1CA240526NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA236864NCI NIH HHS R01 CA240526Prostate Cancer Foundation (PCF) GAP ProgramProstate Cancer Foundation (PCF) YIAUniversity of Texas MD Anderson Cancer Center (MD Anderson) Odyssey FellowshipUniversity of Texas MD Anderson Cancer Center (MD Anderson) Prostate Cancer Moonshot Program
6 · The paper itself

Abstract

Treatment decisions in metastatic castration-resistant prostate cancer are mostly guided by clinical variables, but efforts to molecularly monitor the disease remain hampered by challenges in acquiring tumor tissue repeatedly. In this study, we simultaneously profiled the genome copy number and exome in longitudinal plasma circulating tumor DNA (ctDNA) acquired before, during, and upon progression to serial treatments with androgen signaling inhibitors and taxane chemotherapy from 60 patients with metastatic castration-resistant prostate cancer (2-10 samples per patient). The genomic data were used to delineate the clonal substructure and evolutionary dynamics of each patient, and an evolutionary dynamic index was developed to measure the longitudinal changes of the tumor subclones. Treatment with androgen signaling inhibitors resulted in greater subclonal selection and population structure changes than taxane treatment. The subclones that emerged in association with serial therapy resistance harbored recurrent aberrations in previously identified and new candidate genes, with particular enrichment in genes related to PI3K-AKT signaling. These findings indicate that the integration of detailed clinical and genomic data can provide a framework for future unbiased genomic applications for ctDNA in the clinic to enable precision medicine. Significance: Profiling of the genomic copy number changes and mutations in circulating tumor DNA collected longitudinally from prostate cancer patients receiving serial life-prolonging therapies elucidates evolutionary dynamics and identifies emerging resistant subclones.

Indexed as

Biomarkers, TumorCirculating Tumor DNAProstatic Neoplasms, Castration-ResistantAgedDNA Copy Number VariationsDrug Resistance, NeoplasmHumansLongitudinal StudiesMaleMiddle AgedNeoplasm MetastasisBiomarkers, TumorCirculating Tumor DNA

Identifiers

PMID39992716
PMCPMC12048292

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.