Evidence map›Paper›PMID 39991121›Full record

ArticleIEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum : [proceedings]. IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum2023

Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis.

Nicholson Collier, Justin M Wozniak, Abby Stevens, Yadu Babuji, Mickaël Binois, Arindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik

Abstract read
In one paragraph

Article in IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum : [proceedings]. IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. DISTRIBUTED MODEL EXPLORATION WITH EMEWS.Proceedings of the ... Winter Simulation Conference. Winter Simulation Conference · 2024
    Article
  2. Article
  3. Trajectory-oriented optimization of stochastic epidemiological models.Proceedings of the ... Winter Simulation Conference. Winter Simulation Conference · 2023
    Article
  4. PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs.Proceedings ... IEEE International Conference on eScience. IEEE International Conference on eScience · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nicholson CollierDecision and Infrastructure Sciences, Argonne National Laboratory, Lemont, IL, U.S.A.ORCID 0000-0002-2376-4156
Justin M WozniakData Science and Learning, Argonne National Laboratory, Lemont, IL, U.S.A.ORCID 0000-0002-2441-2048
Abby StevensDecision and Infrastructure Sciences, Argonne National Laboratory, Lemont, IL, U.S.A.ORCID 0000-0003-1976-1806
Yadu BabujiComputer Science, University of Chicago, Chicago, IL, U.S.A.ORCID 0000-0002-9162-6003
Mickaël BinoisAcumes project-team, Inria centre at Université Côte d'Azur, Sophia Antipolis, France.ORCID 0000-0002-7225-1680
Arindam FadikarDecision and Infrastructure Sciences, Argonne National Laboratory, Lemont, IL, U.S.A.ORCID 0000-0001-7396-0350
Alexandra WürthAcumes project-team, Inria centre at Université Côte d'Azur, Sophia Antipolis, France.ORCID 0000-0002-6099-0531
Kyle ChardComputer Science, University of Chicago, Chicago, IL, U.S.A.ORCID 0000-0002-7370-4805
Jonathan OzikDecision and Infrastructure Sciences, Argonne National Laboratory, Lemont, IL, U.S.A.ORCID 0000-0002-3495-6735

Funding

Leveraging data synthesis to identify optimal and robust strategies for HIV elimination among substance-using MSMR01DA055502 · NIDA · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Patrick Francis Janulis · 2022 to 2026
$3.2M
NIDA NIH HHS R01 DA055502
6 · The paper itself

Abstract

COVID-19 had an unprecedented impact on scientific collaboration. The pandemic and its broad response from the scientific community has forged new relationships among domain experts, mathematical modelers, and scientific computing specialists. Computationally, however, it also revealed critical gaps in the ability of researchers to exploit advanced computing systems. These challenging areas include gaining access to scalable computing systems, porting models and workflows to new systems, sharing data of varying sizes, and producing results that can be reproduced and validated by others. Informed by our team's work in supporting public health decision makers during the COVID-19 pandemic and by the identified capability gaps in applying high-performance computing (HPC) to the modeling of complex social systems, we present the goals, requirements, and initial implementation of OSPREY, an open science platform for robust epidemic analysis. The prototype implementation demonstrates an integrated, algorithm-driven HPC workflow architecture, coordinating tasks across federated HPC resources, with robust, secure and automated access to each of the resources. We demonstrate scalable and fault-tolerant task execution, an asynchronous API to support fast time-to-solution algorithms, an inclusive, multi-language approach, and efficient wide-area data management. The example OSPREY code is made available on a public repository.

Indexed as

computational epidemiologyhigh-performance computingHPC workflowsopen science platform

Identifiers

PMID39991121
PMCPMC11845093

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.