Evidence map›Paper›PMID 39990306›Full record

ArticlebioRxiv : the preprint server for biology2025

Circuit-Based Understanding of Fine Spatial Scale Clustering of Orientation Tuning in Mouse Visual Cortex.

Peijia Yu, Yuhan Yang, Olivia Gozel, Ian Oldenburg, Mario Dipoppa, L Federico Rossi, Kenneth Miller, Hillel Adesnik, Na Ji, Brent Doiron

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Peijia YuDepartment of Neurobiology, University of Chicago, Chicago, IL, USA.
Yuhan YangDepartment of Physics, University of California, Berkeley, CA, USA.
Olivia GozelDepartment of Neurobiology, University of Chicago, Chicago, IL, USA.
Ian OldenburgDepartment of Molecular and Cell Biology, University of California, Berkeley, CA USA.
Mario DipoppaDepartment of Neurobiology, University of California, Los Angeles, CA, USA.
L Federico RossiCenter for Neuroscience and Cognitive Systems, Italian Institute of Technology, Rovereto (TN), Italy.
Kenneth MillerCenter for Theoretical Neuroscience, Department of Neuroscience, Columbia University, New York, New York, USA.
Hillel AdesnikHelen Wills Neuroscience Institute, University of California, Berkeley, CA, USA.ORCID 0000-0002-3796-8643
Na JiDepartment of Physics, University of California, Berkeley, CA, USA.
Brent DoironDepartment of Neurobiology, University of Chicago, Chicago, IL, USA.ORCID 0000-0002-6916-5511

Funding

Validating Theoretical Models with Neurophysiology and OptogeneticsU19NS107613 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MILLER, KENNETH D, SCANZIANI, MASSIMO · 2018 to 2022
$16.7M
Excitation and Inhibition in Neural Circuits of the Visual CortexR01EY023756 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Hillel Adesnik · 2013 to 2026
$6.1M
Circuitry underlying response summation in mouse and primate: Theory and experimentU01NS108683 · NINDS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI BRUNEL, NICOLAS, MILLER, KENNETH D · 2018 to 2020
$2.8M
Cortical assembly formation through excitatory/inhibitory circuit plasticityRF1NS133598 · NINDS · UNIVERSITY OF CHICAGO · PI DOIRON, BRENT D., OSWALD, ANNE-MARIE MICHELLE · 2023 to 2023
$2.1M
Editing Population Codes For ActionDP2MH140135 · NIMH · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI OLDENBURG, IAN ANTON · 2024 to 2024
$1.3M
CRCNS: Heterogeneous effects of cognition on perception: unique leverage on circuit mechanismsR01EY034723 · NEI · UNIVERSITY OF CHICAGO · PI COHEN, MARLENE ROCHELLE, DOIRON, BRENT D. · 2022 to 2024
$1.2M
CRCNS: Theory-guided studies of cortical mechanisms of multi-input integrationR01EY029999 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MILLER, KENNETH D, VAN HOOSER, STEPHEN D · 2018 to 2020
$1.2M
Editing the Neural Basis of PerceptionR00EY029758 · NEI · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI OLDENBURG, IAN ANTON · 2022 to 2024
$747k
Cortical adaptation in neural populationsR21EY035064 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RINGACH, DARIO L · 2024 to 2025
$424k
NEI NIH HHS R00 EY029758NEI NIH HHS R01 EY023756NEI NIH HHS R01 EY029999NEI NIH HHS R01 EY034723NEI NIH HHS R21 EY035064NIMH NIH HHS DP2 MH140135NINDS NIH HHS RF1 NS133598NINDS NIH HHS U01 NS108683NINDS NIH HHS U19 NS107613
6 · The paper itself

Abstract

In sensory cortex of brain it is often the case that neurons are spatially organized by their functional properties. A hallmark of primary visual cortex (V1) in higher mammals is a columnar functional map, where neurons tuned to different stimuli features are regularly organized in space. However, rodent visual cortex is at odds with this rule and lacks any spatially ordered functional architecture, and rather neuron feature preference is haphazardly organized in patterns termed 'salt-and-pepper'. This sharp contrast in feature organization between the visual cortices of rodents and higher mammals has been a persistent mystery, fueled in part by abundant evidence of conserved cortical physiology between species. In this work, we applied a novel GCaMP indicator that are localized in the nucleus of neurons during two-photon imaging in mouse V1, which enabled us to overcome most spurious spatially correlated activity due to fluorescence contamination, and to ensure a faithful observation of functional organization over space. We found that the orientation tuning properties of distant neuron pairs (

Identifiers

PMID39990306
PMCPMC11844487

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.