Evidence map›Paper›PMID 39987261›Full record

ArticleNature communications2025

Cooperation of TRADD- and RIPK1-dependent cell death pathways in maintaining intestinal homeostasis.

Ziyu Sun, Jianyu Ye, Weimin Sun, Libo Jiang, Bing Shan, Mengmeng Zhang, Jingyi Xu, Wanjin Li, Jianping Liu, Hongyang Jing and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Regulated cell death: a multidimensional regulatory network in the pathogenesis of renal fibrosis.Apoptosis : an international journal on programmed cell death · 2026
    Review
  8. Article
  9. Mitochondria-associated programmed cell death in pancreatic β cell of T2DM.Apoptosis : an international journal on programmed cell death · 2026
    Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Evaluation of the safety and efficacy ofFrontiers in immunology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ziyu Sun *Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0002-5916-8866
Jianyu Ye *Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0003-1530-0295
Weimin SunInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0003-3647-3988
Libo JiangSchool of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong, 255000, China.ORCID http://orcid.org/0000-0003-4703-9220
Bing ShanInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0003-4178-3526
Mengmeng ZhangInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0009-0001-7229-324X
Jingyi XuUniversity of Chinese Academy of Sciences, Beijing, 100049, China.ORCID http://orcid.org/0009-0004-4534-5536
Wanjin LiInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0003-4177-8006
Jianping LiuInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0001-7090-2112
Hongyang JingInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0003-2811-1266
Tian ZhangInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0002-1702-4274
Meiling HouInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0003-2255-9780
Cen XieState Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, P.R. China.ORCID http://orcid.org/0000-0002-4574-8456
Rongling WuBeijing Key Laboratory of Topological Statistics and Applications for Complex Systems, Beijing Institute of Mathematical Sciences and Applications, Beijing, 101408, China.ORCID http://orcid.org/0000-0002-2334-6421
Heling PanInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China.ORCID http://orcid.org/0000-0003-4039-4553
Junying YuanInterdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 201203, Shanghai, China. junying_yuan@sioc.ac.cn.ORCID http://orcid.org/0000-0003-2405-6036

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32170754National Natural Science Foundation of China (National Science Foundation of China) 32370796National Natural Science Foundation of China (National Science Foundation of China) 82188101National Natural Science Foundation of China (National Science Foundation of China) 92049303Science and Technology Commission of Shanghai Municipality (Shanghai Municipal Science and Technology Commission) 2019SHZDZX02Shanghai Science and Technology Development Foundation (Shanghai Science and Technology Development Fund) 22JC1410400
6 · The paper itself

Abstract

Dysfunctional NF-κB signaling is critically involved in inflammatory bowel disease (IBD). We investigated the mechanism by which RIPK1 and TRADD, two key mediators of NF-κB signaling, in mediating intestinal pathology using TAK1 IEC deficient model. We show that phosphorylation of TRADD by TAK1 modulates RIPK1-dependent apoptosis. TRADD and RIPK1 act cooperatively to mediate cell death regulated by TNF and TLR signaling. We demonstrate the pathological evolution from RIPK1-dependent ileitis to RIPK1- and TRADD-co-dependent colitis in TAK1 IEC deficient condition. Combined RIPK1 inhibition and TRADD knockout completely protect against intestinal pathology and lethality in TAK1 IEC KO mice. Furthermore, we identify distinctive microbiota dysbiosis biomarkers for RIPK1-dependent ileitis and TRADD-dependent colitis. These findings reveal the cooperation between RIPK1 and TRADD in mediating cell death and inflammation in IBD with NF-κB deficiency and suggest the possibility of combined inhibition of RIPK1 kinase and TRADD as a new therapeutic strategy for IBD.

Indexed as

IntestinesReceptor-Interacting Protein Serine-Threonine KinasesTNF Receptor-Associated Death Domain ProteinAnimalsApoptosisCell DeathColitisDisease Models, AnimalHomeostasisHumansIleitisInflammatory Bowel DiseasesIntestinal MucosaMaleMAP Kinase Kinase Kinase 7MAP Kinase Kinase KinasesMAP Kinase Kinase Kinase 7MAP Kinase Kinase KinasesNF-kappa BReceptor-Interacting Protein Serine-Threonine KinasesRipk1 protein, mouseTNF Receptor-Associated Death Domain ProteinTumor Necrosis Factor-alpha

Identifiers

PMID39987261
PMCPMC11846980

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.