Evidence map›Paper›PMID 39987189›Full record

ArticleNature communications2025

Analysis of NS2-dependent effects on influenza PB1 segment extends replication requirements beyond the canonical promoter.

Sharmada Swaminath, Marisa Mendes, Yipeng Zhang, Kaleigh A Remick, Isabel Mejia, Melissa Güereca, Aartjan J W Te Velthuis, Alistair B Russell

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Sharmada Swaminath *Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-3760-8266
Marisa Mendes *Department of Molecular Biology, School of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-4070-7038
Yipeng ZhangDepartment of Molecular Biology, School of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA.ORCID http://orcid.org/0009-0001-0519-1403
Kaleigh A RemickLewis Thomas Laboratory, Department of Molecular Biology, Princeton University, Princeton, NJ, USA.
Isabel MejiaDepartment of Molecular Biology, School of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA.ORCID http://orcid.org/0009-0002-7590-3792
Melissa GüerecaDepartment of Molecular Biology, School of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA.
Aartjan J W Te VelthuisLewis Thomas Laboratory, Department of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-5129-3953
Alistair B RussellDepartment of Molecular Biology, School of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA. a5russell@ucsd.edu.ORCID http://orcid.org/0000-0002-5342-2309

Funding

Pathways in Biological Sciences Training ProgramT32GM133351 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty, Randolph Y. Hampton · 2020 to 2026
$9.9M
Methods and Logic in Molecular Biology Training ProgramT32GM148739 · NIGMS · PRINCETON UNIVERSITY · PI Ileana M. Cristea · 2023 to 2026
$3.6M
Structure and dynamics of RNA elements regulating viral aberrant RNA synthesisDP2AI175474 · NIAID · PRINCETON UNIVERSITY · PI TE VELTHUIS, AREND JAN · 2022 to 2025
$2.4M
Understanding evasion of cell intrinsic innate immunity in viral populations with high rates of replicative failureR35GM147031 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Alistair B Russell · 2022 to 2026
$1.9M
National Science Foundation (NSF) DGE-2039656NIAID NIH HHS DP2 AI175474NIGMS NIH HHS R35 GM147031NIGMS NIH HHS T32 GM133351NIGMS NIH HHS T32 GM148739U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI175474U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 1T32GM148739-01A1U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM147031
6 · The paper itself

Abstract

Influenza A virus encodes conserved promoter sequences. Using minimal replication assays-transfections with viral polymerase, nucleoprotein, and a genomic template-these sequences were identified as 13nt at the 5' end of the genomic RNA (U13) and 12nt at the 3' end (U12). Other than the fourth 3' nucleotide, the U12 and U13 sequences are identical between all eight RNA molecules of the segmented influenza A genome. However, individual segments can exhibit different dynamics during infection. Influenza NS2, which modulates transcription and replication differentially between genomic segments, may provide an explanation. Here, we assess how internal sequences of two genomic segments, HA and PB1, contribute to NS2-dependent replication and map such interactions down to individual nucleotides in PB1. We find that the expression of NS2 significantly alters sequence requirements for efficient replication beyond the identical U12 and U13 sequences, providing a potential mechanism for segment-specific replication dynamics across the influenza genome.

Indexed as

Influenza A virusPromoter Regions, GeneticViral Nonstructural ProteinsViral ProteinsVirus ReplicationAnimalsDogsGenome, ViralHumansInfluenza, HumanMadin Darby Canine Kidney CellsRNA, Viralinfluenza virus polymerase basic protein 1RNA, ViralViral Nonstructural ProteinsViral Proteins

Identifiers

PMID39987189
PMCPMC11846981

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.