Evidence map›Paper›PMID 39984886›Full record

ArticleBMC biology2025

Unraveling the role of satellite DNAs in the evolution of the giant XY sex chromosomes of the flea beetle Omophoita octoguttata (Coleoptera, Chrysomelidae).

Jhon Alex Dziechciarz Vidal, Deborah Charlesworth, Ricardo Utsunomia, Manuel A Garrido-Ramos, Rodrigo Zeni Dos Santos, Fábio Porto-Foresti, Roberto Ferreira Artoni, Thomas Liehr, Mara Cristina de Almeida, Marcelo de Bello Cioffi

Abstract read
In one paragraph

Article in BMC biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Satellite DNA evolution in two holocentric species of Edessa true bugs (Hemiptera: Pentatomidae) with unusually high heterochromatin abundance.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Article
  3. Article
  4. Cytogenomics of Myloplus tiete reveals conserved satellite DNAs since the Late Eocene in Serrasalmidae (Teleostei, Characiformes).Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Article
  5. Article
  6. Satellite DNA Genomics: The Ongoing Story.International journal of molecular sciences · 2025
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jhon Alex Dziechciarz VidalLaboratory of Evolutionary Cytogenetics, Department of Genetics and Evolution, Federal University of São Carlos, São Carlos, SP, Brazil.
Deborah CharlesworthInstitute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK.
Ricardo UtsunomiaFaculdade de Ciências, UNESP, Bauru, São Paulo, Brazil.
Manuel A Garrido-RamosDepartamento de Genética, Facultad de Ciencias, Universidad de Granada, Granada, 18071, Spain.
Rodrigo Zeni Dos SantosFaculdade de Ciências, UNESP, Bauru, São Paulo, Brazil.
Fábio Porto-ForestiFaculdade de Ciências, UNESP, Bauru, São Paulo, Brazil.
Roberto Ferreira ArtoniLaboratory of Genetics and Evolution, Department of Molecular Structural Biology and Genetics, State University of Ponta Grossa (UEPG), Av. Carlos Cavalcanti, Ponta Grossa, 4748, Brazil.
Thomas LiehrInstitute of Human Genetics, Jena University Hospital, Friedrich Schiller University, Jena, Germany. Thomas.Liehr@med.uni-jena.de.
Mara Cristina de AlmeidaLaboratory of Genetics and Evolution, Department of Molecular Structural Biology and Genetics, State University of Ponta Grossa (UEPG), Av. Carlos Cavalcanti, Ponta Grossa, 4748, Brazil.
Marcelo de Bello CioffiLaboratory of Evolutionary Cytogenetics, Department of Genetics and Evolution, Federal University of São Carlos, São Carlos, SP, Brazil.

Funding

Fundação de Amparo à Pesquisa do Estado de São Paulo 2023/00955-2Fundação de Amparo à Pesquisa do Estado de São Paulo 2023/06898-0
6 · The paper itself

Abstract

backgroundThe flea beetle Omophoita octoguttata (Coleoptera, Chrysomelidae) is a member of a group in which the males completely lack meiotic recombination (male-specific achiasmy) and that have extraordinarily large X and Y chromosomes. We combined genome sequencing, including microdissected Y and X chromosomes, and cytogenetic in situ hybridization studies, to evaluate the potential role of satellite DNAs (satDNAs) in the differentiation of those gigantic sex chromosomes.

resultsWe report flow cytometry results showing that this species has a very large genome size (estimated to be 4.61 and 5.47 pg, or roughly 4.6 and 5.5 gigabases, for males and females, respectively), higher than the estimates from two other Alticinae species without giant sex chromosomes, suggesting that these sequences have greatly expanded on both the sex chromosomes, and that the Y has not greatly shrunk like the ones of other insects such as Drosophila with male achiasmy. About 68% of this large genome is made up of repetitive DNAs. Satellite DNAs (OocSatDNAs) form ~ 8-9% of their genomes, and we estimate how much of the sex chromosome expansions occurred due to differential amplification of different satellite classes. Analysis of divergence between sequences in the X and Y chromosomes suggests that, during the past roughly 20 mya, different OocSatDNAs amplified independently, leading to different representations. Some are specific to the Y or X chromosome, as expected when males are achiasmate, completely preventing genetic exchanges between the Y and X.

Indexed as

ColeopteraDNA, SatelliteEvolution, MolecularSex ChromosomesX ChromosomeY ChromosomeAnimalsChromosomes, InsectFemaleGenome, InsectGenome SizeMaleDNA, SatelliteRepetitive DNASatellitomeTransposable elements

Identifiers

PMID39984886
PMCPMC11846391

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.