Evidence map›Paper›PMID 39984476›Full record

ArticleScientific data2025

Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagi.

Clarissa Boschiero, Ethiopia Beshah, Mariam Bakshi, Peter Thompson, Xiaoping Zhu, George E Liu, Wenbin Tuo

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Profiling Genome-Wide Methylation Patterns in Cattle Infected withInternational journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Clarissa BoschieroAnimal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, Maryland, 20705, USA.ORCID http://orcid.org/0000-0002-6575-5266
Ethiopia BeshahAnimal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, Maryland, 20705, USA.
Mariam BakshiAnimal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, Maryland, 20705, USA.
Peter ThompsonAnimal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, Maryland, 20705, USA.
Xiaoping ZhuDepartment of Veterinary Medicine, University of Maryland, College Park, Maryland, 20742, USA.
George E LiuAnimal Genomics and Improvement Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, Maryland, 20705, USA. george.liu@usda.gov.ORCID http://orcid.org/0000-0003-0192-6705
Wenbin TuoAnimal Parasitic Diseases Laboratory, BARC, Agricultural Research Service, USDA, Beltsville, Maryland, 20705, USA. wenbin.tuo@usda.gov.ORCID http://orcid.org/0000-0002-3764-8981

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we infected Holstein calves with Ostertagia ostertagi stage 3 larvae (L3) and determined gene expression profiles of abomasal fundic and pyloric mucosa by RNA sequencing (RNA-seq) at 3-5, 7-9, 10, and 21 days post-infection (dpi), which represent late L3 and early L4 (between 3-5 dpi), mid to late L4 (between 7-9 and 10 dpi) and adult stages (21 dpi) of the parasitic stage. Bioinformatics analyses were performed to profile the transcriptomic changes over time as well as between cattle abomasal tissues. The results will help understand the gastric responses of the host, especially the immune responses, at different phases of early nematode infection. Such an undertaking is crucial for an in-depth comprehension of host responses, where immunologic reagents for cattle are highly limited. The RNA-seq datasets generated in this study provide a vital data resource, allowing for future comparative analyses to similar data resources or using more advanced analytical technologies in mechanisms of host-parasite interactions.

Indexed as

AbomasumCattle DiseasesGastric MucosaOstertagiaOstertagiasisTranscriptomeAnimalsCattleGene Expression ProfilingHost-Parasite InteractionsRNA-Seq

Identifiers

PMID39984476
PMCPMC11845743

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.