Evidence map›Paper›PMID 39982945›Full record

ArticlePloS one2025

Improving topic modeling performance on social media through semantic relationships within biomedical terminology.

Yi Xin, Monika E Grabowska, Srushti Gangireddy, Matthew S Krantz, V Eric Kerchberger, Alyson L Dickson, Qiping Feng, Zhijun Yin, Wei-Qi Wei

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yi XinDepartment of Computer Science, Vanderbilt University, Nashville, Tennessee, United States of America.ORCID 0009-0007-7983-8277
Monika E GrabowskaDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0003-0708-676X
Srushti GangireddyDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Matthew S KrantzDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
V Eric KerchbergerDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0002-0342-1965
Alyson L DicksonDepartment of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0003-3404-3802
Qiping FengDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Zhijun YinDepartment of Computer Science, Vanderbilt University, Nashville, Tennessee, United States of America.
Wei-Qi WeiDepartment of Computer Science, Vanderbilt University, Nashville, Tennessee, United States of America.ORCID 0000-0003-4985-056X

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007347 · NIGMS · VANDERBILT UNIVERSITY · PI WILLIAMS, CHRISTOPHER S. · 1985 to 2023
$26.3M
Medical Scientist Training ProgramT32GM152284 · NIGMS · VANDERBILT UNIVERSITY · PI Christopher S. Williams · 2024 to 2026
$4.8M
Drug repositioning for Alzheimer's disease via genetics, electronic health records, and human iPSC modelsR01AG069900 · NIA · VANDERBILT UNIVERSITY · PI LI, BINGSHAN, WEI, WEI-QI · 2021 to 2025
$4.0M
Transforming dbGaP genetic and genomic data to FAIR-ready by artificial intelligence and machine learning algorithmsR01LM012806 · NLM · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Zhongming Zhao · 2017 to 2026
$3.7M
Genetics and Triglycerides: opportunities for new approaches to identify therapiesR01HL163854 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI FENG, QIPING · 2022 to 2025
$3.1M
Predictive modeling of Alzheimer's Disease Related Dementias (ADRD) in the elderly population empowered by knowledge-driven data miningR01HG012748 · NHGRI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HONGFANG LIU · 2023 to 2026
$3.1M
Targeting Residual ASCVD Risk by Integrating Genetics and Clinical DataR01HL171809 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Qiping Feng, Wei-Qi Wei · 2024 to 2026
$2.6M
PheMAP: Measured, Automated Profile to Facilitate High Throughput PhenotypingR01GM139891 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI WEI, WEI-QI · 2021 to 2024
$1.7M
Tissue-specific functional genomics in the acute respiratory distress syndromeK01HL157755 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI KERCHBERGER, VERN ERIC · 2021 to 2025
$845k
A Translational Bioinformatics Approach for Phenotyping and Genetic Risk of Severe Cutaneous Adverse Drug ReactionsK08AI185260 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Matthew Steven Krantz · 2025 to 2026
$373k
NHGRI NIH HHS R01 HG012748NHLBI NIH HHS K01 HL157755NHLBI NIH HHS R01 HL163854NHLBI NIH HHS R01 HL171809NIAID NIH HHS K08 AI185260NIAID NIH HHS L30 AI186122NIA NIH HHS R01 AG069900NIGMS NIH HHS R01 GM139891NIGMS NIH HHS T32 GM007347NIGMS NIH HHS T32 GM152284NLM NIH HHS R01 LM012806
6 · The paper itself

Abstract

Topic modeling utilizes unsupervised machine learning to detect underlying themes within texts and has been deployed routinely to analyze social media for insights into healthcare issues. However, the inherent messiness of social media hinders the full realization of this technique's potential. As such, we hypothesized that restricting medical concepts in social media texts to specific related semantic types and applying topic modeling to these concepts could be a feasible approach to overcome the challenge of traditional topic modeling for social media texts. Therefore, we developed a semantic-type-based topic modeling pipeline to discover self-reported health-related topics. This pipeline integrated semantic type information and Systematized Medical Nomenclature for Medicine (SNOMED) precoordinated expressions into a traditional topic modeling approach to enhance effectiveness in clustering meaningful, distinct topics. Using social media texts regarding statins for illustration, we evaluated the efficacy of this new approach and validated a newly identified topic using real-world clinical data. Based on expert evaluations, this approach resulted in more novel, distinguishable, and meaningful health-related topics compared to traditional topic modeling. In addition, our electronic health record validation for a newly identified topic in two real-world clinical databases indicated that statin users had a higher prevalence of depression or anxiety compared to matched non-users. Our results indicate that this new topic modeling pipeline can improve the extraction of themes from noisy online discussions, thereby contributing to deeper insights for healthcare research.

Indexed as

SemanticsSocial MediaTerminology as TopicElectronic Health RecordsHumansSystematized Nomenclature of Medicine

Identifiers

PMID39982945
PMCPMC11845042

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.