Evidence map›Paper›PMID 39979680›Full record

ArticleEuropean journal of human genetics : EJHG2025

Biallelic TEDC1 variants cause a new syndrome with severe growth impairment and endocrine complications.

Noriko Miyake, Kentaro Shiga, Yuya Hasegawa, Chisato Iwabuchi, Kohei Shiroshita, Hiroshi Kobayashi, Keiyo Takubo, Fabien Velilla, Akiteru Maeno, Toshihiro Kawasaki and 10 more

Abstract readCase Reports
In one paragraph

Article in European journal of human genetics : EJHG, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Noriko MiyakeDepartment of Human Genetics, National Center for Global Health and Medicine, Tokyo, Japan. nomiyake@ri.ncgm.go.jp.ORCID 0000-0001-5322-2983
Kentaro ShigaChildren's Medical Center, Yokohama City University Medical Center, Yokohama, Japan.
Yuya HasegawaDepartment of Gene Function and Phenomics, National Institute of Genetics, Mishima, Japan.
Chisato IwabuchiDepartment of Human Genetics, National Center for Global Health and Medicine, Tokyo, Japan.
Kohei ShiroshitaDepartment of Stem Cell Biology, Research Institute, National Center for Global Health and Medicine, Tokyo, Japan.ORCID 0009-0001-8721-2430
Hiroshi KobayashiDepartment of Stem Cell Biology, Research Institute, National Center for Global Health and Medicine, Tokyo, Japan.ORCID 0000-0002-0924-1252
Keiyo TakuboDepartment of Stem Cell Biology, Research Institute, National Center for Global Health and Medicine, Tokyo, Japan.
Fabien VelillaDepartment of Gene Function and Phenomics, National Institute of Genetics, Mishima, Japan.
Akiteru MaenoCell Architecture Laboratory, National Institute of Genetics, Mishima, Japan.ORCID 0000-0003-0235-3478
Toshihiro KawasakiDepartment of Gene Function and Phenomics, National Institute of Genetics, Mishima, Japan.
Yukiko ImaiDepartment of Gene Function and Phenomics, National Institute of Genetics, Mishima, Japan.ORCID 0000-0002-4716-2563
Noriyoshi SakaiDepartment of Gene Function and Phenomics, National Institute of Genetics, Mishima, Japan.
Tomonori HiroseDepartment of Molecular Biology, Yokohama City University Graduate School of Medicine, Yokohama, Japan.ORCID 0000-0003-2428-0919
Atsushi FujitaDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.ORCID 0000-0003-1572-1014
Hidehisa TakahashiDepartment of Molecular Biology, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Nobuhiko OkamotoDepartment of Medical Genetics, Osaka Women's and Children's Hospital, Osaka, Japan.
Mikako EnokizonoDepartment of Radiology, Tokyo Metropolitan Children's Medical Center, Tokyo, Japan.
Shiho IwasakiIwasaki Shiho Pediatric Clinic, Yokohama, Japan.
Shuichi ItoDepartment of Pediatrics, Yokohama City University Graduate School of Medicine, Yokohama, Japan.
Naomichi MatsumotoDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan. naomat@yokohama-cu.ac.jp.ORCID 0000-0001-9846-6500

Funding

Japan Agency for Medical Research and Development (AMED) JP24ek0109674, JP24ek0109760, JP24ek0109617, JP24ek0109648 and JP24ek0109677MEXT | Japan Society for the Promotion of Science (JSPS) JP19H03621 and JP22H03047National Center for Global Health and Medicine (NCGM) 21A1011 and 23A1014
6 · The paper itself

Abstract

We encountered two affected male patients born to non-consanguineous parents, who presented with prenatal-onset severe growth impairment, primary microcephaly, developmental delay, adrenal insufficiency, congenital glaucoma, delayed bone aging, craniosynostosis, congenital tracheal stenosis, and primary hypogonadism. By exome sequencing, we identified compound heterozygous TEDC1 variants (NM_001134877.1 c.[104-5C>G];[787delG] p.[?];[(Ala263LeufsTer29)] in both affected siblings. We confirmed that the splice site variant, c.104-5C>G, leads to no TEDC1 protein production via nonsense-mediated mRNA decay. The frameshift variant located in the last coding exon, c.787delG, produces a C-terminally truncated protein, which impairs the binding with TEDC2. Thus, both variants are thought to be loss-of-function. TEDC1 and TEDC2 are both required for centriole stability and cell proliferation. Our in vitro experiments using patient-derived cells revealed cell cycle abnormality. Our in vivo study using tedc1

Indexed as

Adrenal InsufficiencyDevelopmental DisabilitiesGrowth DisordersMicrocephalyAdolescentAnimalsChildFemaleHumansMaleSyndromeZebrafish

Identifiers

PMID39979680
PMCPMC12185738

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.