Evidence map›Paper›PMID 39979386›Full record

ArticleScientific data2025

A chromosome-scale reference assembly of Vigna radiata enables delineation of centromeres and telomeres.

Praveen Kumar Oraon, Heena Ambreen, Priyanka Yadav, Satyawada Ramarao, Shailendra Goel

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Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. High-contiguity genome assembly of moth bean (Frontiers in plant science · 2026
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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Praveen Kumar OraonDepartment of Botany, University of Delhi, Delhi, 110007, India.
Heena AmbreenDepartment of Biosciences, University of Exeter, Exeter, UK.
Priyanka YadavDepartment of Botany, University of Delhi, Delhi, 110007, India.
Satyawada RamaraoDepartment of Life Sciences, School of Basic Sciences and Research, Sharda University, Greater Noida, Uttar Pradesh, 201310, India.
Shailendra GoelDepartment of Botany, University of Delhi, Delhi, 110007, India. sgoel@botany.du.ac.in.

Funding

Council of Scientific and Industrial Research (CSIR) 09/0045(1617)/2019-EMR-ICouncil of Scientific and Industrial Research (CSIR) 09/0045(1624)/2019-EMR-IDepartment of Biotechnology, Ministry of Science and Technology (DBT) BT/190/NE/TBP/2011Department of Biotechnology, Ministry of Science and Technology (DBT) BT/PR24637/NER/95/787/2017University of Delhi (Delhi University) IOE/FRP/LS/2020/27
6 · The paper itself

Abstract

Vigna radiata (L.) R. Wilczek var. radiata (mungbean) is a pulse crop important for both the global protein security and sustainable crop production. Here, to facilitate genomics-assisted breeding programs in mungbean, we present a high-quality reference genome originating from the crop's centre of origin, India. In this study, we present a significantly continuous genome assembly of V. radiata Indian cultivar, achieved through a combination of long-read PacBio HiFi sequencing and Hi-C sequencing. The total assembled genome size is ~596 Mb equating to ~98% of the predicted genome size complemented by a contig N50 value of 10.35 Mb and a BUSCO score of 98.5%. Around 502 Mb of the assembled genome is anchored on 11 pseudochromosomes conforming to the chromosome count in the crop with distinctly identified telomeres and centromeres. We predicted a total of 43,147 gene models of which 39,144 protein coding genes were functionally annotated. The present assembly was able to resolve several gaps in the genome and provides a high-quality genomic resource for accelerating mungbean breeding programs.

Indexed as

CentromereChromosomes, PlantGenome, PlantTelomereVignaIndiaPlant Breeding

Identifiers

PMID39979386
PMCPMC11842788

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