Evidence map›Paper›PMID 39977364›Full record

ArticleGenomics, proteomics & bioinformatics2025

The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion.

Yingke Ma, Xuetong Zhao, Yaokai Jia, Zhenxian Han, Caixia Yu, Zhuojing Fan, Zhang Zhang, Jingfa Xiao, Wenming Zhao, Yiming Bao and 1 more

Abstract read
In one paragraph

Article in Genomics, proteomics & bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yingke MaNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0000-0002-9460-4117
Xuetong ZhaoNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0000-0002-3019-8615
Yaokai JiaNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0009-0003-9677-4624
Zhenxian HanNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0009-0001-4467-5080
Caixia YuNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0000-0002-3882-9979
Zhuojing FanNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0009-0003-3575-6967
Zhang ZhangNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0000-0001-6603-5060
Jingfa XiaoNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0000-0002-2835-4340
Wenming ZhaoNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0000-0002-4396-8287
Yiming BaoNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0000-0002-9922-9723
Meili ChenNational Genomics Data Center, China National Center for Bioinformation, Beijing 100101, China.ORCID 0000-0003-0102-0292

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Genome Warehouse (GWH), accessible at https://ngdc.cncb.ac.cn/gwh, is an extensively-utilized public repository dedicated to the deposition, management, and sharing of genome assembly sequences, annotations, and metadata. This paper highlights noteworthy enhancements to the GWH since the 2021 version, emphasizing substantial advancements in web interfaces for data submission, database functionality updates, and resource integration. Key updates include the reannotation of released prokaryotic genomes, mirroring of genome resources from National Center for Biotechnology Information (NCBI) GenBank and Reference Sequence Database (RefSeq), integration of Poxviridae sequences, implementation of an online batch submission system, enhancements to the quality control system, advanced search capabilities, and the introduction of a controlled-access mechanism for human genome data. These improvements collectively enhance the ease and security of data submission and access as well as genome data value, thereby improving convenience and utility for researchers in the genomics field.

Indexed as

Computer SecurityDatabases, GeneticGenomicsGenome, HumanHumansGenBank and RefSeqGenome annotationGenome assemblyGenome databaseGenome Warehouse

Identifiers

PMID39977364
PMCPMC12221864

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.