Evidence map›Paper›PMID 39976326›Full record

ArticleeLife2025

Systems genomics of salinity stress response in rice.

Sonal Gupta, Simon Niels Groen, Maricris L Zaidem, Andres Godwin C Sajise, Irina Calic, Mignon Natividad, Kenneth McNally, Georgina V Vergara, Rahul Satija, Steven J Franks and 3 more

Abstract read
In one paragraph

Article in eLife, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Salinity Stress in Rice: Multilayered Approaches for Sustainable Tolerance.International journal of molecular sciences · 2025
    Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Sonal GuptaCenter for Genomics and Systems Biology, New York University, New York, United States.ORCID https://orcid.org/0000-0002-4419-2345
Simon Niels GroenCenter for Genomics and Systems Biology, New York University, New York, United States.
Maricris L ZaidemCenter for Genomics and Systems Biology, New York University, New York, United States.
Andres Godwin C SajiseInternational Rice Research Institute, Los Baños, Philippines.
Irina CalicDepartment of Biological Sciences, Fordham University, Bronx, United States.
Mignon NatividadInternational Rice Research Institute, Los Baños, Philippines.
Kenneth McNallyInternational Rice Research Institute, Los Baños, Philippines.
Georgina V VergaraInternational Rice Research Institute, Los Baños, Philippines.
Rahul SatijaCenter for Genomics and Systems Biology, New York University, New York, United States.
Steven J FranksDepartment of Biological Sciences, Fordham University, Bronx, United States.
Rakesh K SinghInternational Rice Research Institute, Los Baños, Philippines.
Zoé Joly-LopezDépartement de Chimie, Université du Quebéc à Montréal, Montreal, Canada.ORCID https://orcid.org/0000-0002-7926-322X
Michael D PuruggananCenter for Genomics and Systems Biology, New York University, New York, United States.ORCID https://orcid.org/0000-0002-9197-4112

Funding

Evolutionary Systems Biology of Host-Parasite InteractionsR35GM151194 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI Simon Cornelis Groen · 2023 to 2026
$1.5M
Canada Research Chairs CRC-2021-00126Gordon and Betty Moore Foundation GBMF2550.06Life Sciences Research Foundation GBMF2550.06National Science Foundation IOS 1546218National Science Foundation IOS 2204374Natural Sciences and Engineering Research Council of Canada RGPIN-2021-03302NIGMS NIH HHS R35 GM151194NIGMS NIH HHS R35GM151194
6 · The paper itself

Abstract

Populations can adapt to stressful environments through changes in gene expression. However, the fitness effect of gene expression in mediating stress response and adaptation remains largely unexplored. Here, we use an integrative field dataset obtained from 780 plants of

Indexed as

Gene Expression Regulation, PlantGenomicsOryzaSalt StressStress, PhysiologicalQuantitative Trait LociSalinitySelection, Geneticgene expressionindicaoryza sativaOryza sativaplant biologyricesalinity stress

Identifiers

PMID39976326
PMCPMC11841989

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.