Evidence map›Paper›PMID 39976303›Full record

ReviewChembiochem : a European journal of chemical biology2025

Interactive 3D Objects Enhance Scientific Communication of Structural Data.

Daniel Mokos, Bastian Daniel

Abstract readReview
In one paragraph

Review in Chembiochem : a European journal of chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Crystal Structure and Conformational Dynamics of N─N Bond-Forming Piperazate Synthase.Chembiochem : a European journal of chemical biology · 2026
    Article
  2. Interactive 3D Objects Enhance Scientific Communication of Structural Data.Chembiochem : a European journal of chemical biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Daniel MokosDepartment of Structural Biology, Institute of Molecular Biosciences, University of Graz, Humboldtstraße 50, 8010, Graz, Austria.ORCID https://orcid.org/0000-0003-3603-4061
Bastian DanielDepartment of Structural Biology, Institute of Molecular Biosciences, University of Graz, Humboldtstraße 50, 8010, Graz, Austria.ORCID https://orcid.org/0000-0001-9210-7136

Funding

Austrian Science Fund 10.55776/DOC130Austrian Science Fund 10.55776/DOC46Austrian Science Fund 10.55776/P34337
6 · The paper itself

Abstract

In scientific communication about three-dimensional structures, creating two-dimensional representations is standard practice. These representations often suffer from the drawback of losing potential information due to dimensionality reduction. Several options exist to present, share and publish 3D figures, however based on recent publications they are not widely utilized. Here we present simple ways to preserve the three-dimensionality of the structure by the creation of a custom-made model in GLTF format that is generated in the same workflow as the conventional figures. They can be published alongside a given manuscript with minimal additional effort to the authors, but a huge impact on the communicative power of the manuscript concerning the three-dimensional features of the reported structures. The scripts we adapted and published for this purpose open up new possibilities for the illustrator and allow the viewer to access the full three-dimensionality of the published structure. In future, this can simplify the publication process of protein structures or other models and be a valuable tool for scientific communication in digital or printed form.

Indexed as

ProteinsModels, MolecularProtein ConformationProteinsBioinformaticsCommunicationStructural biologyStructure elucidationStructure representation

Identifiers

PMID39976303
PMCPMC11907382

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.