Evidence map›Paper›PMID 39976080›Full record

ArticleHistopathology2025

Role of single-nucleotide polymorphism microarray in the classification of BAP1-inactivated melanocytic tumours.

Joseph S Durgin, Nicholas A Zoumberos, Taylor Novice, Douglas R Fullen, Alexandra C Hristov, Lori Lowe, Rajiv M Patel, Paul W Harms, Aleodor A Andea, Scott C Bresler

Abstract read
In one paragraph

Article in Histopathology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Joseph S DurginDepartment of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0002-1114-817X
Nicholas A ZoumberosDepartment of Pathology, University of Arkansas, Little Rock, Arkansas, USA.ORCID https://orcid.org/0000-0003-4590-8146
Taylor NoviceDepartment of Pathology, University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0002-9896-2894
Douglas R FullenDepartment of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0002-2524-4509
Alexandra C HristovDepartment of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0002-1836-6591
Lori LoweDepartment of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0002-2359-8426
Rajiv M PatelDepartment of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0002-1521-4947
Paul W HarmsDepartment of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0002-0802-2883
Aleodor A AndeaDepartment of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0003-0874-5616
Scott C BreslerDepartment of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.ORCID https://orcid.org/0000-0003-2504-466X

Funding

TRAINING PROGRAM IN CELL AND MOLECULAR DERMATOLOGYT32AR007197 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JAMES TILFORD ELDER, Sunny Y Wong · 1986 to 2026
$4.2M
NIAMS NIH HHS T32 AR007197NIH HHS
6 · The paper itself

Abstract

aimsBAP1-inactivated melanocytic tumours (BIMTs) occur sporadically and in association with a familial tumour predisposition syndrome involving germline mutations in the BRCA1-associated protein-1 (BAP1) gene. Here we report the clinical features, histopathologic findings, and chromosomal copy number data of 19 BAP1-inactivated melanocytomas (BIMs) and compare their features to those of five BAP1-inactivated melanomas.

methodsWe retrospectively searched the Department of Pathology archives and EMERSE (Electronic Medical Record Search Engine) for BIMTs that had undergone single-nucleotide polymorphism (SNP) microarray testing. Clinical history/follow-up data, detailed histopathologic features, and SNP microarray results were recorded.

resultsOverall, four patients (4/13) with BIMs and available clinical history had features suspicious for a germline BAP1 aberration. In BIMs (19 cases), the BAP1-inactivated component showed variable cytologic features, including epithelioid (predominant), rhabdoid, plasmacytoid, and nevoid morphologies. Sentinel lymph node biopsy was negative in all (6/6) patients in which this procedure was performed. No patient diagnosed with a BIM with available clinical follow-up (18/19; mean 38 months) experienced an adverse event. While the histologic appearances of the five melanomas varied, one case resembled a BIM. The median mitotic count was 1/mm

conclusionWhile most BIMs appear to have a favourable prognosis, even those with multiple CNAs, they deserve careful integration of all clinical and pathologic findings. Although not fully diagnostic, a mitotic count of ≥3/mm

Indexed as

MelanomaSkin NeoplasmsTumor Suppressor ProteinsUbiquitin ThiolesteraseAdultAgedFemaleHumansMaleMiddle AgedPolymorphism, Single NucleotideRetrospective StudiesYoung AdultBAP1 protein, humanTumor Suppressor ProteinsUbiquitin ThiolesteraseBAP1‐inactivated melanocytomachromosomal microarray analysismelanomasingle nucleotide polymorphism microarray

Identifiers

PMID39976080
PMCPMC12129603

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.