Evidence map›Paper›PMID 39975582›Full record

ArticleRSC chemical biology2025

Cryo-electron microscopy reveals a single domain antibody with a unique binding epitope on fibroblast activation protein alpha.

Zhen Xu, Akesh Sinha, Darpan N Pandya, Nicholas J Schnicker, Thaddeus J Wadas

Abstract read
In one paragraph

Article in RSC chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Zhen XuProtein and Crystallography Facility, University of Iowa Iowa City Iowa 52242 USA nicholas-schnicker@uiowa.edu.ORCID https://orcid.org/0000-0001-8855-0565
Akesh SinhaDepartment of Radiology, University of Iowa Iowa City Iowa 52242 USA Thaddeus-wadas@uiowa.edu.
Darpan N PandyaDepartment of Radiology, University of Iowa Iowa City Iowa 52242 USA Thaddeus-wadas@uiowa.edu.
Nicholas J SchnickerProtein and Crystallography Facility, University of Iowa Iowa City Iowa 52242 USA nicholas-schnicker@uiowa.edu.ORCID https://orcid.org/0000-0002-5189-4943
Thaddeus J WadasDepartment of Radiology, University of Iowa Iowa City Iowa 52242 USA Thaddeus-wadas@uiowa.edu.ORCID https://orcid.org/0000-0002-9913-0336

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Aptamer-Based Radiopharmaceuticals for the Targeted Alpha Particle Therapy of Prostate CancerR21CA227709 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI GMEINER, WILLIAM H., WADAS, THADDEUS J. · 2019 to 2020
$378k
PET Imaging of the Tumor Microenvironment for Cancer DetectionR21CA219899 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WADAS, THADDEUS J. · 2018 to 2019
$366k
NCI NIH HHS P30 CA086862NCI NIH HHS R21 CA219899NCI NIH HHS R21 CA227709
6 · The paper itself

Abstract

Fibroblast activation protein alpha (FAP) is a serine protease that is expressed at basal levels in benign tissues but is overexpressed in a variety of pathologies, including cancer. Despite this unique expression profile, designing functional diagnostic and therapeutic agents that effectively target this biomarker remains elusive. Here we report the structural characterization of the interaction between a novel single domain antibody (sdAb), I3, and FAP using cryo-electron microscopy. The reconstructions were determined to a resolution of 2.7 Å and contained two distinct populations; one I3 bound and two I3 molecules bound to the FAP dimer. In both cases, the sdAb bound a unique epitope that was distinct from the active site of the enzyme. Furthermore, this report describes the rational mutation of specific residues within the complementarity determining region 3 (CDR3) loop to enhance affinity and selectivity of the I3 molecule for FAP. This report represents the first sdAb-FAP structure to be described in the literature.

Identifiers

PMID39975582
PMCPMC11834968

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.