Evidence map›Paper›PMID 39975409›Full record

ArticlebioRxiv : the preprint server for biology2025

Capturing dynamic phage-pathogen coevolution by clinical surveillance.

Yamini Mathur, Caroline M Boyd, Jeannette E Farnham, Md Mamun Monir, Mohammad Tarequl Islam, Marzia Sultana, Tahmeed Ahmed, Munirul Alam, Kimberley D Seed

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Yamini MathurDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Caroline M BoydDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Jeannette E FarnhamDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Md Mamun Moniricddr,b, International Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Mohammad Tarequl Islamicddr,b, International Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Marzia Sultanaicddr,b, International Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Tahmeed Ahmedicddr,b, International Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Munirul Alamicddr,b, International Centre for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh.
Kimberley D SeedDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0002-0139-1600

Funding

Phage resistance and mobile genetic elements in Vibrio choleraeR01AI127652 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SEED, KIMBERLEY DIANE · 2016 to 2025
$4.6M
Molecular mechanisms driving the coevolution of clinical isolates of phages and epidemic Vibrio choleraeR01AI153303 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Kimberley Diane Seed · 2020 to 2026
$4.3M
NIAID NIH HHS HHSN272201700060CNIAID NIH HHS R01 AI127652NIAID NIH HHS R01 AI153303
6 · The paper itself

Abstract

Bacteria harness diverse defense systems that protect against phage predation

Identifiers

PMID39975409
PMCPMC11838301

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.