Evidence map›Paper›PMID 39975326›Full record

ArticlebioRxiv : the preprint server for biology2025

Neuropixels Opto: Combining high-resolution electrophysiology and optogenetics.

Anna Lakunina, Karolina Z Socha, Alexander Ladd, Anna J Bowen, Susu Chen, Jennifer Colonell, Anjal Doshi, Bill Karsh, Michael Krumin, Pavel Kulik and 18 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors.

Anna LakuninaAllen Institute for Neural Dynamics, Seattle, WA, USA.ORCID 0000-0003-2628-8834
Karolina Z SochaUCL Institute of Ophthalmology, University College London, London, UK.ORCID 0000-0002-1677-1489
Alexander LaddDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.ORCID 0000-0003-0999-1608
Anna J BowenDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.ORCID 0000-0002-8911-2572
Susu ChenJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0000-0002-5065-1157
Jennifer ColonellJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0009-0009-3940-0689
Anjal DoshiAllen Institute for Neural Dynamics, Seattle, WA, USA.ORCID 0009-0005-7093-1462
Bill KarshJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0009-0009-5977-7731
Michael KruminUCL Institute of Ophthalmology, University College London, London, UK.ORCID 0000-0001-7356-6994
Pavel KulikAllen Institute for Neural Dynamics, Seattle, WA, USA.ORCID 0009-0005-2222-0324
Anna LiDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.ORCID 0000-0001-6287-2910
Pieter NeutensIMEC, Leuven, Belgium.ORCID 0000-0002-0620-0033
John O'CallaghanIMEC, Leuven, Belgium.ORCID 0000-0003-2313-8697
Meghan OlsenAllen Institute for Neural Dynamics, Seattle, WA, USA.ORCID 0009-0008-1050-935X
Jan PutzeysIMEC, Leuven, Belgium.ORCID 0000-0001-8834-5852
Harrie Ac TilmansIMEC, Leuven, Belgium.ORCID 0000-0003-4240-4962
Zhiwen YeDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.ORCID 0000-0003-4311-1037
Marleen WelkenhuysenIMEC, Leuven, Belgium.ORCID 0000-0001-6729-9391
Michael HäusserWolfson Institute for Biomedical Research, University College London, London, UK.ORCID 0000-0002-2673-8957
Christof KochAllen Institute MindScope Program, Seattle, WA, USA.ORCID 0000-0001-6482-8067
Jonathan T TingDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.ORCID 0000-0001-8266-0392
Neuropixels Opto Consortium
Barun DuttaIMEC, Leuven, Belgium.
Timothy D HarrisJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.ORCID 0000-0002-6289-4439
Nicholas A SteinmetzDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7029-2908
Karel SvobodaAllen Institute for Neural Dynamics, Seattle, WA, USA.ORCID 0000-0002-6670-7362
Joshua H SiegleAllen Institute for Neural Dynamics, Seattle, WA, USA.ORCID 0000-0002-7736-4844
Matteo CarandiniUCL Institute of Ophthalmology, University College London, London, UK.ORCID 0000-0003-4880-7682

Funding

Open-Access AAV Toolbox for Basal Ganglia Cell Types and CircuitsUF1MH128339 · NIMH · ALLEN INSTITUTE · PI BAKKEN, TRYGVE, DAIGLE, TANYA LYNN · 2021 to 2021
$7.3M
Neuropixels Opto: Integrated Silicon Probes for Cell-Type-Specific ElectrophysiologyU01NS133760 · NINDS · ALLEN INSTITUTE · PI SIEGLE, JOSHUA H, SVOBODA, KAREL · 2023 to 2025
$6.3M
NIMH NIH HHS UF1 MH128339NINDS NIH HHS U01 NS133760Wellcome Trust
6 · The paper itself

Abstract

High-resolution extracellular electrophysiology is the gold standard for recording spikes from distributed neural populations, and is especially powerful when combined with optogenetics for manipulation of specific cell types with high temporal resolution. We integrated these approaches into prototype Neuropixels Opto probes, which combine electronic and photonic circuits. These devices pack 960 electrical recording sites and two sets of 14 light emitters onto a 1 cm shank, allowing spatially addressable optogenetic stimulation with blue and red light. In mouse cortex, Neuropixels Opto probes delivered high-quality recordings together with spatially addressable optogenetics, differentially activating or silencing neurons at distinct cortical depths. In mouse striatum and other deep structures, Neuropixels Opto probes delivered efficient optotagging, facilitating the identification of two cell types in parallel. Neuropixels Opto probes represent an unprecedented tool for recording, identifying, and manipulating neuronal populations.

Identifiers

PMID39975326
PMCPMC11838571

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.