Evidence map›Paper›PMID 39975322›Full record

ArticlebioRxiv : the preprint server for biology2025

SiR-XActin: A fluorescent probe for imaging actin dynamics in live cells.

Veselin Nasufovic, Julian Kompa, Halli L Lindamood, Merle Blümke, Birgit Koch, Victoria Le-Vario-Diaz, Katharina Weber, Marlene Maager, Elisabetta Ada Cavalcanti-Adam, Eric A Vitriol and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Veselin NasufovicFriedrich-Schiller-Universität, Institut für Organische und Makromolekulare Chemie, Humboldtstr. 10, D-07743 Jena, Germany.ORCID 0000-0001-6812-637X
Julian KompaMax Planck Institute for Medical Research, Department of Chemical Biology, Jahnstrasse 29, D-69120 Heidelberg, Germany.ORCID 0000-0002-4479-5429
Halli L LindamoodDepartment of Neuroscience and Regenerative Medicine, Medical College of Georgia at Augusta University, Augusta, Georgia, USA.ORCID 0000-0002-9848-8969
Merle BlümkeFriedrich-Schiller-Universität, Institut für Organische und Makromolekulare Chemie, Humboldtstr. 10, D-07743 Jena, Germany.
Birgit KochMax Planck Institute for Medical Research, Department of Chemical Biology, Jahnstrasse 29, D-69120 Heidelberg, Germany.ORCID 0000-0003-4683-3115
Victoria Le-Vario-DiazMax Planck Institute for Medical Research, Department of Cellular Biophysics, Jahnstrasse 29, D-69120 Heidelberg, Germany.ORCID 0000-0001-5338-9812
Katharina WeberMax Planck Institute for Medical Research, Department of Cellular Biophysics, Jahnstrasse 29, D-69120 Heidelberg, Germany.
Marlene MaagerMax Planck Institute for Medical Research, Department of Cellular Biophysics, Jahnstrasse 29, D-69120 Heidelberg, Germany.
Elisabetta Ada Cavalcanti-AdamMax Planck Institute for Medical Research, Department of Cellular Biophysics, Jahnstrasse 29, D-69120 Heidelberg, Germany.ORCID 0000-0003-0243-1552
Eric A VitriolDepartment of Neuroscience and Regenerative Medicine, Medical College of Georgia at Augusta University, Augusta, Georgia, USA.ORCID 0000-0003-3398-1450
Hans-Dieter ArndtFriedrich-Schiller-Universität, Institut für Organische und Makromolekulare Chemie, Humboldtstr. 10, D-07743 Jena, Germany.ORCID 0000-0002-0792-1422
Kai JohnssonMax Planck Institute for Medical Research, Department of Chemical Biology, Jahnstrasse 29, D-69120 Heidelberg, Germany.ORCID 0000-0002-8002-1981

Funding

Deciphering the Mechanisms and Cellular Roles of Monomer-Driven Actin DynamicsR35GM137959 · NIGMS · UNIVERSITY OF FLORIDA · PI VITRIOL, ERIC A · 2020 to 2024
$2.3M
NIGMS NIH HHS R35 GM137959
6 · The paper itself

Abstract

Imaging actin-dependent processes in live cells is important for understanding numerous biological processes. However, currently used natural-product based fluorescent probes for actin filaments affect the dynamics of actin polymerization and can induce undesired cellular phenotypes. Here, we introduce SiR-XActin, a simplified jasplakinolide-based, far-red fluorescent probe that enables bright and photostable staining in various cell types without requiring genetic modifications. Due to its relatively weak binding affinity, the probe exhibits minimal cytotoxicity and labels actin filaments without significantly altering actin dynamics. Furthermore, SiR-XActin is suitable for time-resolved, live-cell super-resolution STED microscopy. Exchanging the SiR fluorophore in SiR-XActin for other fluorophores yields probes in different colors. All these properties make SiR-XActin and its analogs powerful tools for studying actin dynamics using live-cell fluorescence microscopy.

Identifiers

PMID39975322
PMCPMC11838552

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.