Evidence map›Paper›PMID 39975291›Full record

ArticlebioRxiv : the preprint server for biology2025

Inferring active and passive mechanical drivers of epithelial convergent extension.

Sommer Anjum, Deepthi Vijayraghavan, Rodrigo Fernandez-Gonzalez, Ann Sutherland, Lance Davidson

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sommer AnjumDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA 15260, USA.ORCID 0000-0002-3327-9867
Deepthi VijayraghavanDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Rodrigo Fernandez-GonzalezInstitute of Biomedical Engineering, University of Toronto, Toronto, ON, M5S 3G9, Canada.ORCID 0000-0003-0770-744X
Ann SutherlandDepartment of Cell Biology, University of Virginia Health System, Charlottesville, VA 22908, USA.ORCID 0000-0003-1925-2825
Lance DavidsonDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA 15260, USA.ORCID 0000-0002-2956-0437

Funding

Training in Biomechanics in Regenerative MedicineT32EB003392 · NIBIB · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WOO, SAVIO L-Y. · 2005 to 2020
$4.0M
The Biomechanics of morphogenesis in the frogR01HD044750 · NICHD · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI DAVIDSON, LANCE A. · 2005 to 2020
$3.8M
Mechanisms of mechanotransduction during neural tube morphogenesisR01HD107872 · NICHD · UNIVERSITY OF VIRGINIA · PI Xiaowei Lu, Ann E Sutherland · 2022 to 2026
$2.7M
Biomechanics of MorphogenesisR37HD044750 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LANCE A. DAVIDSON · 2022 to 2026
$2.1M
Vangl2 function in mammalian convergent extensionR01HD087093 · NICHD · UNIVERSITY OF VIRGINIA · PI SUTHERLAND, ANN E · 2016 to 2020
$1.6M
High-speed and high-resolution Zeiss880 multiphoton microscopy systemS10OD025156 · OD · UNIVERSITY OF VIRGINIA · PI PERIASAMY, AMMASI · 2019 to 2019
$600k
Tunable White Light Laser Confocal/Spectral Imaging MicroscopyS10RR025616 · NCRR · UNIVERSITY OF VIRGINIA · PI PERIASAMY, AMMASI · 2009 to 2009
$500k
Engineering the OrganizerR21HD106629 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DAVIDSON, LANCE A. · 2021 to 2022
$415k
NCRR NIH HHS S10 RR025616NIBIB NIH HHS T32 EB003392NICHD NIH HHS R01 HD044750NICHD NIH HHS R01 HD087093NICHD NIH HHS R01 HD107872NICHD NIH HHS R21 HD106629NICHD NIH HHS R37 HD044750NIH HHS S10 OD025156
6 · The paper itself

Abstract

What can we learn about the mechanical processes that shape tissues by simply watching? Several schemes suggest that static cell morphology or junctional connectivity can reveal where chains of cells transmit force or where force asymmetries drive cellular rearrangements. We hypothesize that dynamic cell shape changes from time lapse sequences can be used to distinguish specific mechanisms of tissue morphogenesis. Convergent extension (CE) is a crucial developmental motif wherein a planar tissue narrows in one direction and lengthens in the other. It is tempting to assume that forces driving CE reside within cells of the deforming tissue, as CE may reflect a variety of active processes or passive responses to forces generated by adjacent tissues. In this work, we first construct a simple model of epithelial cells capable of passive CE in response to external forces. We adapt this framework to simulate CE from active anisotropic processes in three different modes: crawling, contraction, and capture. We develop an image analysis pipeline for analysis of morphogenetic changes in both live cells and simulated cells using a panel of mechanical and statistical approaches. Our results allow us to identify how each simulated mechanism uniquely contributes to tissue morphology and provide insight into how force transmission is coordinated. We construct a MEchanism Index (MEI) to quantify how similar live cells are to simulated passive and active cells undergoing CE. Applying these analyses to live cell data of

Indexed as

BiophysicsComputational ModellingConvergent ExtensionEpitheliaForce InferenceGastrulationIn Silico ModelingMorphogenesisNeurulationTissue Mechanics

Identifiers

PMID39975291
PMCPMC11838355

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.