Evidence map›Paper›PMID 39975109›Full record

ArticlebioRxiv : the preprint server for biology2025

Optogenetic interrogation of the lateral-line sensory system reveals mechanisms of pattern separation in the zebrafish brain.

Nicolas Velez-Angel, Sihao Lu, Brian Fabella, Caleb C Reagor, Holland R Brown, Yuriria Vázquez, Adrian Jacobo, A J Hudspeth

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Nicolas Velez-AngelLaboratory of Sensory Neuroscience, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-8908-7768
Sihao LuLaboratory of Sensory Neuroscience, The Rockefeller University, New York, NY, USA.ORCID 0009-0009-3340-6502
Brian FabellaLaboratory of Sensory Neuroscience, The Rockefeller University, New York, NY, USA.
Caleb C ReagorLaboratory of Sensory Neuroscience, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-8304-1267
Holland R BrownSackler Institute of Developmental Psychobiology, Weill Cornell Medicine, New York, NY, USA.ORCID 0009-0000-8809-3384
Yuriria VázquezLaboratory of Sensory Neuroscience, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-4198-1135
Adrian JacoboChan Zuckerberg BioHub, San Francisco, CA, USA.ORCID 0000-0001-9381-6292
A J HudspethLaboratory of Sensory Neuroscience, The Rockefeller University, New York, NY, USA.

Funding

SCAPE microscopy for high-speed 3D imaging of cellular function in behaving animals: Continued innovation, optimization, and disseminationUF1NS108213 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HILLMAN, ELIZABETH M. C. · 2018 to 2018
$3.5M
SCAPE microscopy for high-speed in-vivo volumetric microscopy in behaving organismsU01NS094296 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HILLMAN, ELIZABETH M. C. · 2015 to 2017
$2.0M
NINDS NIH HHS U01 NS094296NINDS NIH HHS UF1 NS108213
6 · The paper itself

Abstract

The ability of animals to interact with their environment hinges on the brain's capacity to distinguish between patterns of sensory information and accurately attribute them to specific sensory organs. The mechanisms by which neuronal circuits discriminate and encode the source of sensory signals remain elusive. To address this, we utilized as a model the posterior lateral line system of larval zebrafish, which is used to detect water currents. This system comprises a series of mechanosensory organs called neuromasts, which are innervated by neurons from the posterior lateral line ganglion. By combining single-neuromast optogenetic stimulation with whole-brain calcium imaging, we developed a novel approach to investigate how inputs from neuromasts are processed. Upon stimulating individual neuromasts, we observed that neurons in the brain of the zebrafish show diverse selectivity properties despite a lack of topographic organization in second-order circuits. We further demonstrated that complex combinations of neuromast stimulation are represented by sparse ensembles of neurons within the medial octavolateralis nucleus (MON) and found that neuromast input can be integrated nonlinearly. Our approach offers an innovative method for spatiotemporally interrogating the zebrafish lateral line system and presents a valuable model for studying whole-brain sensory encoding.

Indexed as

brainstemcalcium imagingdecoderhair cellmedial octavolateralis nucleusposterior lateral line

Identifiers

PMID39975109
PMCPMC11839093

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.