Evidence map›Paper›PMID 39975085›Full record

ArticlebioRxiv : the preprint server for biology2025

Parkinson's disease-associated alterations in DNA methylation and hydroxymethylation in human brain.

Juliana I Choza, Mahek Virani, Nathan C Kuhn, Marie Adams, Joseph Kochmanski, Alison I Bernstein

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Juliana I ChozaDepartment of Pharmacology and Toxicology, Ernest Mario School of Pharmacy, Rutgers University, Piscataway, NJ.ORCID 0000-0001-7038-9750
Mahek ViraniDepartment of Pharmacology and Toxicology, Ernest Mario School of Pharmacy, Rutgers University, Piscataway, NJ.ORCID 0009-0006-6094-4478
Nathan C KuhnDepartment of Translational Neuroscience, College of Human Medicine, Michigan State University, Grand Rapids, MI.
Marie AdamsGenomics Core, Van Andel Research Institute, Grand Rapids, MI.ORCID 0000-0001-7909-2339
Joseph KochmanskiDepartment of Translational Neuroscience, College of Human Medicine, Michigan State University, Grand Rapids, MI.ORCID 0000-0002-8472-3032
Alison I BernsteinDepartment of Pharmacology and Toxicology, Ernest Mario School of Pharmacy, Rutgers University, Piscataway, NJ.ORCID 0000-0002-5589-4318

Funding

Research Education ComponentP30AG019610 · NIA · SUN HEALTH RESEARCH INSTITUTE · PI REIMAN, ERIC MICHAEL · 2001 to 2020
$32.5M
Research Education ComponentP30AG072980 · NIA · BANNER HEALTH · PI ALIREZA ATRI · 2021 to 2026
$24.9M
National Brain and Tissue Resource for Parkinson's Disease and Related DisordersU24NS072026 · NINDS · BANNER SUN HEALTH RESEARCH INSTITUTE · PI BEACH, THOMAS G · 2011 to 2015
$7.8M
Diversity Supplement to Dieldrin-induced differential gene methylation and parkinsonian toxicity (R01ES031237)R01ES031237 · NIEHS · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI BERNSTEIN, ALISON · 2021 to 2025
$2.3M
NIA NIH HHS P30 AG019610NIA NIH HHS P30 AG072980NIEHS NIH HHS R01 ES031237NINDS NIH HHS U24 NS072026
6 · The paper itself

Abstract

Epigenetic mechanisms are mediators of interactions between aging, genetics, and environmental factors in sporadic Parkinson's disease (PD). Multiple studies have explored the DNA modifications in PD, but few focus on 5-hydroxymethylcytosine (5-hmC), which is important in the central nervous system and sensitive to environmental exposures. To date, studies have not differentiated between 5-methylcytosine (5-mC) and 5-hmC or have analyzed them separately. In this study, we modeled paired 5-mC and 5-hmC data simultaneously. We identified 108 cytosines with significant PD-associated shifts between these marks in an enriched neuronal population from PD postmortem parietal cortex, within 83 genes and 34 enhancers associated with 67 genes. These data potentially link epigenetic regulation of genes related to LRRK2 and endolysosomal sort (

Identifiers

PMID39975085
PMCPMC11838189

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.