Evidence map›Paper›PMID 39975054›Full record

ArticlebioRxiv : the preprint server for biology2025

A ggplot-based single-gene viewer reveals insights into the translatome and other nucleotide-resolution omics data.

Hsin-Yen Larry Wu, Isaiah D Kaufman, Polly Yingshan Hsu

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

  • Updated by
    The2025
5 · Who and what money

Authors and funding

3 authors.

Hsin-Yen Larry WuDepartment of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI 48824 USA.ORCID 0000-0001-9407-338X
Isaiah D KaufmanDepartment of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI 48824 USA.ORCID 0000-0001-7091-1887
Polly Yingshan HsuDepartment of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI 48824 USA.ORCID 0000-0001-7071-5798

Funding

Plant Biotechnology for Health and SustainabilityT32GM110523 · NIGMS · MICHIGAN STATE UNIVERSITY · PI LAST, ROBERT LOUIS · 2014 to 2023
$2.2M
Regulation of upstream open reading frames in mRNA stability and translationR35GM155375 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Polly Hsu · 2024 to 2026
$1.1M
Plant Biotechnology for Health and SustainabilityT32GM152798 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Daniel C Ducat, Robert Louis Last · 2024 to 2026
$976k
NIGMS NIH HHS R35 GM155375NIGMS NIH HHS T32 GM110523NIGMS NIH HHS T32 GM152798
6 · The paper itself

Abstract

Seeing is believing. Visualizing Ribo-seq and other sequencing data within genes of interest is a powerful approach to studying gene expression, but its application is limited by a lack of robust tools. Here, we introduce

Indexed as

periodicityribosome profilingsingle-nucleotide resolutiontranslationvisualization

Identifiers

PMID39975054
PMCPMC11838514

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.