ArticlebioRxiv : the preprint server for biology2025
IGD: A simple, efficient genotype data format.
Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Motivation: While there are a variety of file formats for storing reference-sequence-aligned genotype data, many are complex or inefficient. Programming language support for such formats is often limited. A file format that is simple to understand and implement - yet fast and small - is helpful for research on highly scalable bioinformatics. Results: We present the Indexable Genotype Data (IGD) file format, a simple uncompressed binary format that can be more than 100 times faster and 3.5 times smaller than Availability: A C++ library reading and writing IGD, and tooling to convert
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