Evidence map›Paper›PMID 39971970›Full record

ArticleScientific reports2025

Genomic profiling of pediococcus acidilactici BCB1H and identification of its key features for Biotechnological innovation, food technology and medicine.

Tariq Aziz, Muhammad Naveed, Muhammad Aqib Shabbir, Jasra Naseeb, Abid Sarwar, Liqing Zhao, Zhennai Yang, Cui Haiying, Lin Lin, Ashwag Shami and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Probiotic properties and functional potential of high-GABABiochemistry and biophysics reports · 2026
    Article
  5. Article
  6. Draft genome sequence of a potential probioticMicrobiology resource announcements · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Tariq AzizDepartment of Food Science and Technology, College of Chemistry and Environmental Engineering, Shenzhen University Shenzhen, Guangdong, Shenzhen, China.
Muhammad NaveedDepartment of Biotechnology, Faculty of Science and Technology, University of Central, Punjab, Lahore, 54590, Pakistan.
Muhammad Aqib ShabbirDepartment of Biotechnology, Faculty of Biological Sciences, Lahore University of Biological and Applied Sciences, Lahore, Pakistan.
Jasra NaseebKey Laboratory of Geriatric Nutrition and Health of Ministry of Education, Beijing Advanced Innovation Center for Food Nutrition and Human Health, Beijing Technology and Business University, Beijing, China.
Abid SarwarKey Laboratory of Geriatric Nutrition and Health of Ministry of Education, Beijing Advanced Innovation Center for Food Nutrition and Human Health, Beijing Technology and Business University, Beijing, China.
Liqing ZhaoDepartment of Food Science and Technology, College of Chemistry and Environmental Engineering, Shenzhen University Shenzhen, Guangdong, Shenzhen, China. liqing.zhao@szu.edu.cn.
Zhennai YangKey Laboratory of Geriatric Nutrition and Health of Ministry of Education, Beijing Advanced Innovation Center for Food Nutrition and Human Health, Beijing Technology and Business University, Beijing, China. yangzhennai@th.btbu.edu.cn.
Cui HaiyingSchool of Food and Biological Engineering, Jiangsu University, 212013, Zhenjiang, Jiangsu, China.
Lin LinSchool of Food and Biological Engineering, Jiangsu University, 212013, Zhenjiang, Jiangsu, China. linl@ujs.edu.cn.
Ashwag ShamiDepartment of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh, 11671, Saudi Arabia.
Fahad Al-AsmariDepartment of Food and Nutrition Sciences, College of Agricultural and Food Sciences, King Faisal University, Al Ahsa, Saudi Arabia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lactic acid bacteria has been extensively used in food industry because of widespread properties and Pediococcus is among one of them. This study aims to conduct a comprehensive genomic analysis of Pediococcus acidilactici strain BCB1H to elucidate its genetic composition, functional elements, and potential biotechnological applications. The objectives include identifying key genomic features such as coding sequences, tRNA and rRNA genes, antibiotic resistance genes, and secondary metabolite biosynthetic gene clusters, which will highlight the adaptability and potential of P. acidilactici strain BCB1H for use in a variety of industrial and therapeutic applications. P. acidilactici strain BCB1H was analyzed using whole-genome sequencing, which used advanced sequencing technologies to obtain comprehensive genomic data. Key genomic features, such as coding sequences, tRNA and rRNA genes, antibiotic resistance genes, and secondary metabolite biosynthetic gene clusters, were identified through bioinformatics analyses. The genomic analysis of P. acidilactici strain BCB1H revealed a genome size of approximately 1.92 million base pairs with a GC content of 42.4%. The annotation identified 1,895 genes across 192 subsystems, highlighting the metabolic pathways and functional categories. Notably, specialty genes associated with carbohydrate metabolism, stress response, pathogenicity, and amino acid synthesis were identified, underscoring the versatility and potential applications in food technology and medicine. These findings shed light on the genetic makeup and functional potential of P. acidilactici strain BCB1H, highlighting its flexibility and industrial importance. The genetic traits discovered suggest its prospective use in probiotics, food preservation, and biotechnological advancements.

Indexed as

Genome, BacterialGenomicsPediococcus acidilacticiBiotechnologyMultigene FamilyWhole Genome SequencingAntibiotic resistance genesBCB1HBiosynthetic gene clustersMetabolic pathwaysPediococcus acidilacticirRNA genestRNA genes

Identifiers

PMID39971970
PMCPMC11839972

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.