Evidence map›Paper›PMID 39969106›Full record

ReviewProtein science : a publication of the Protein Society2025

From duplication to fusion: Expanding Dayhoff's model of protein evolution.

Yusran Abdillah Muthahari, Lilian Magnus, Paola Laurino

Abstract readReview
In one paragraph

Review in Protein science : a publication of the Protein Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. PFGPred: a stack ensemble classifier for the identification of fusion genes in plants.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
    Article
  3. Descent from a common ancestor restricts exploration of protein sequence space.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. From duplication to fusion: Expanding Dayhoff's model of protein evolution.Protein science : a publication of the Protein Society · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yusran Abdillah MuthahariProtein Engineering and Evolution Unit, Okinawa Institute of Science and Technology, Okinawa, Japan.ORCID 0000-0002-9705-0586
Lilian MagnusProtein Engineering and Evolution Unit, Okinawa Institute of Science and Technology, Okinawa, Japan.ORCID 0009-0008-6925-9930
Paola LaurinoProtein Engineering and Evolution Unit, Okinawa Institute of Science and Technology, Okinawa, Japan.ORCID 0000-0002-3725-2645

Funding

Japan Society for the Promotion of Science KAKENHI 24K17829Okinawa Institute of Science and Technology Graduate University
6 · The paper itself

Abstract

Dayhoff's hypothesis suggests that complex proteins emerged from simpler peptides or domains, which duplicated and fused to create more complex proteins and novel functions. These processes expanded and diversified the protein repertoire within organisms. Extensive studies and reviews over the past two decades have highlighted the impact of gene duplication on protein evolution. However, the role of fusion in this evolutionary narrative remains less understood. This perspective seeks to address this gap by emphasizing the role of fusion in evolution. Fusion is critical in determining the evolutionary fate of duplicated protomers, either preserving their ancestral function or evolving entirely new functions. It complements mutations, insertions, and deletions as evolutionary steps to enhance protein evolvability by expanding the capacity of the protein to explore new structural and functional space.

Indexed as

Evolution, MolecularGene DuplicationProteinsAnimalsHumansProteinsDayhoff's hypothesisduplicationfunctionfusionprotein evolution

Identifiers

PMID39969106
PMCPMC11837038

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.