Evidence map›Paper›PMID 39968360›Full record

ArticleAnimal cells and systems2025

Lamin B1 regulates RNA splicing factor expression by modulating the spatial positioning and chromatin interactions of the

Geun-Seup Shin, Ah-Ra Jo, Jinho Kim, Ji-Young Kim, Chul-Hong Kim, Mi-Jin An, Hyun-Min Lee, Yuna Park, Yujeong Hwangbo, Jung-Woong Kim

Abstract read
In one paragraph

Article in Animal cells and systems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Geun-Seup ShinDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Ah-Ra JoDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Jinho KimDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Ji-Young KimDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Chul-Hong KimDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Mi-Jin AnDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Hyun-Min LeeDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Yuna ParkDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Yujeong HwangboDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.
Jung-Woong KimDepartment of Life Science, Chung-Ang University, Seoul, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lamin B1, a crucial component of the nuclear lamina, plays a pivotal role in chromatin organization and transcriptional regulation in eukaryotic cells. While recent studies have highlighted the connection between Lamin B1 and RNA splicing regulation, the precise molecular mechanisms remain elusive. In this study, we demonstrate that Lamin B1 depletion leads to a global reduction in splicing factor expression, as evidenced by analysis of multiple RNA-seq datasets. Motif analysis suggests that members of the ETS transcription factor family likely bind to the promoter regions of these splicing factors. Further analysis using transcription factor databases and ChIP-seq data identified ETS1 as a key regulator of splicing factor expression. Hi-C sequencing revealed that the loss of Lamin B1 disrupts inter-LAD chromatin interactions near the ETS1 gene locus, resulting in its downregulation. These findings suggest that Lamin B1 indirectly regulates RNA splicing by sustaining proper ETS1 expression, uncovering a novel link between nuclear architecture, gene regulation, and RNA splicing.

Indexed as

chromatin organizationETS1Lamin B1RNA splicingupstream regulator

Identifiers

PMID39968360
PMCPMC11834782

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.