Evidence map›Paper›PMID 39966750›Full record

ArticleBMC plant biology2025

Transcriptomic and metabolomic study of the biosynthetic pathways of bioactive components in Amomum tsaoko fruits.

Dengli Luo, Yingmin Zhang, Ling Jin, Xien Wu, Congwei Yang, Ticao Zhang, Guodong Li

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Integrative phytochemical profiling andFrontiers in nutrition · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dengli Luo *College of Chinese Material Medica, Yunnan University of Chinese Medicine, Kunming, 650500, China.
Yingmin Zhang *College of Chinese Material Medica, Yunnan University of Chinese Medicine, Kunming, 650500, China.
Ling JinCollege of Chinese Material Medica, Yunnan University of Chinese Medicine, Kunming, 650500, China.
Xien WuCollege of Chinese Material Medica, Yunnan University of Chinese Medicine, Kunming, 650500, China.
Congwei YangCollege of Chinese Material Medica, Yunnan University of Chinese Medicine, Kunming, 650500, China.
Ticao ZhangState Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China. zhangticao@mail.kib.ac.cn.
Guodong LiCollege of Chinese Material Medica, Yunnan University of Chinese Medicine, Kunming, 650500, China. gammar116@163.com.

Funding

National Natural Science Foundation of China 82260739, 32260094the Yunnan Provincial Science and Technology Department - Applied Basic Research Joint Special Funds of Yunnan University of Traditional Chinese Medicine 202101AZ070001-005
6 · The paper itself

Abstract

Amomum tsaoko is a significant medicinal and edible plant with documented efficacy in the treatment of various diseases. Additionally, it is a crucial food additive and spice. 1,8-cineole and curcumin are the main bioactive compounds of A. tsaoko, and research on these compounds has mainly focused on their chemical composition and pharmacological activity, with relatively less exploration of synthetic pathways and identification of key genes. This study employed transcriptome sequencing and metabolomic analysis of A. tsaoko at five different developmental stages (May fruit - September fruit) to assess the accumulation patterns of terpenoid and curcuminoid compounds and to explore the key genes and transcription factors (TFs) involved in their synthesis pathways. The results showed that three genes encoding 1-deoxy-D-xylulose-5-phosphate synthase (DXS), hydroxymethylglutaryl-CoA synthase (HMGCS) and phosphomevalonate kinase (mvaK2) and TFs such as AP2-ERF, bHLH, WRKY were screened for involvement in terpenoid biosynthesis. In addition, three genes encoding trans-cinnamate 4-monooxygenase (C4H), curcumin synthase (CURS) and TFs such as MYB, bHLH, bZIP were screened for involvement in curcuminoid biosynthesis. This study provides a theoretical foundation for further research into the biosynthesis of active components in A. tsaoko, establishing a basis for in-depth investigations into the mechanisms underlying its medicinal quality formation. Additionally, it offers guidance for the utilisation of its aromatic components and natural pigments.

Indexed as

AmomumBiosynthetic PathwaysFruitTranscriptomeCurcuminGene Expression ProfilingGene Expression Regulation, PlantMetabolomicsTerpenesTranscription FactorsCurcuminTerpenesTranscription FactorsAmomum tsaokoCurcuminoidsMetabolomicsTerpenoidsTranscriptional RegulationTranscriptomics

Identifiers

PMID39966750
PMCPMC11834249

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.