Evidence map›Paper›PMID 39966682›Full record

ArticleCommunications biology2025

Structure and evolution of the Forsythieae genome elucidated by chromosome-level genome comparison of Abeliophyllum distichum and Forsythia ovata (Oleaceae).

Hoyeol Jang, Haneul Kim, Ara Cho, Hee-Ju Yu, Sun Mi Huh, Hyuk-Jin Kim, Dong-Kab Kim, Joonhyung Jung, Joo-Hwan Kim, Jeong-Hwan Mun

Abstract readComparative Study
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hoyeol JangDepartment of Bioscience and Bioinformatics, Myongji University, Yongin, 17058, Korea.
Haneul KimDepartment of Bioscience and Bioinformatics, Myongji University, Yongin, 17058, Korea.
Ara ChoDepartment of Bioscience and Bioinformatics, Myongji University, Yongin, 17058, Korea.
Hee-Ju YuDepartment of Medical and Biological Sciences, The Catholic University of Korea, Bucheon, 14662, Korea.
Sun Mi HuhDepartment of Medical and Biological Sciences, The Catholic University of Korea, Bucheon, 14662, Korea.
Hyuk-Jin KimDivision of Forest Biodiversity, Korea National Arboretum, Pocheon, 11186, Korea.
Dong-Kab KimDivision of Forest Biodiversity, Korea National Arboretum, Pocheon, 11186, Korea.
Joonhyung JungDepartment of Life Science, Gachon University, Seongnam, 13120, Korea.
Joo-Hwan KimDepartment of Life Science, Gachon University, Seongnam, 13120, Korea.
Jeong-Hwan MunDepartment of Bioscience and Bioinformatics, Myongji University, Yongin, 17058, Korea. munjh@mju.ac.kr.ORCID http://orcid.org/0000-0003-4330-3637

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Abeliophyllum distichum and Forsythia ovata are two closely related ornamental species of the tribe Forsythieae (Oleaceae) native to Korea. Here we report their genomic characteristics, highlighting genetic differences contributing to variations in corolla coloration, genomic variations associated with heterostyly, and the reconstruction of their ancestral karyotypes. Genome comparison revealed that A. distichum had a more compact organization of gene space than F. ovata. Centromeres of both species were enriched in Forsythieae-specific satellite repeats, hAT-Ac and MuLE-MuDR DNA transposons, and OTA-Athila Ty3/Gypsy retrotransposons. Transcriptome analysis revealed spatially differential expression of carotenoid biosynthesis-related genes in A. distichum, with downregulation in the white lobe and upregulation in the yellow base. Genome-wide analysis of structural variation in A. distichum identified retrotransposon insertions in the promoter region of an AGAMOUS homolog in the thrum plant, which showed significant downregulation of the gene compared to the pin plant. Evolutionary analyses suggested that the Oleaceae genomes evolved from 13 ancestral karyotypes via lineage-specific genomic events, including chromosome recombination, rearrangement, and whole-genome duplication followed by diploidization. The divergence of A. distichum and F. ovata was estimated to have occurred 13.87 million years ago during the Miocene epoch.

Indexed as

Chromosomes, PlantEvolution, MolecularGenome, PlantPhylogenyRetroelementsRetroelements

Identifiers

PMID39966682
PMCPMC11836285

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.