Evidence map›Paper›PMID 39963715›Full record

ArticleMetallomics : integrated biometal science2025

Time-resolved proteomic profiling of Cupriavidus metallidurans CH34 in the copper-induced viable-but-nonculturable state.

Timothej Patocka, Surya Gupta, Felice Mastroleo, Natalie Leys, Jean-Yves Matroule, Rob Van Houdt

Abstract read
In one paragraph

Article in Metallomics : integrated biometal science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Timothej PatockaMicrobiology Unit, Nuclear Medical Applications, Belgian Nuclear Research Centre, SCK CEN, Mol, Belgium.
Surya GuptaMicrobiology Unit, Nuclear Medical Applications, Belgian Nuclear Research Centre, SCK CEN, Mol, Belgium.
Felice MastroleoMicrobiology Unit, Nuclear Medical Applications, Belgian Nuclear Research Centre, SCK CEN, Mol, Belgium.
Natalie LeysMicrobiology Unit, Nuclear Medical Applications, Belgian Nuclear Research Centre, SCK CEN, Mol, Belgium.
Jean-Yves MatrouleResearch Unit in Biology of Microorganisms, University of Namur, Namur, Belgium.
Rob Van HoudtMicrobiology Unit, Nuclear Medical Applications, Belgian Nuclear Research Centre, SCK CEN, Mol, Belgium.ORCID 0000-0002-7459-496X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Copper-based materials are actively explored for their potential as antimicrobial agents. However, recent studies show that sublethal concentrations of Cu ions can induce the viable-but-nonculturable (VBNC) cell state in certain bacteria, hampering contamination control, and monitoring. In this study we contribute to the unravelling of this largely enigmatic phenomenon by determining the time-resolved proteome of Cu-treated Cupriavidus metallidurans CH34 during VBNC induction and resuscitation. High-throughput quantitative liquid chromatography tandem mass spectrometry (LC-MS/MS) analysis was performed at multiple sample time points, revealing the cellular adaptations that trigger VBNC formation and the characteristic spontaneous recovery of culturability. Entry into the VBNC state correlated with a widespread response to oxidative stress as well as downregulated pyruvate metabolism. The expression of specific metal resistance determinants changed with Cu exposure time and culminated in the strong upregulation of proteins linked to periplasmic Cu ion detoxification during the resuscitation phase. We suggest that this delayed induction of Cu resistance proteins is paralleled by the gradual reconstitution of energy reserves through metabolization of intracellular polyhydroxybutyrate, as supported by flow cytometric fluorescence measurements. Furthermore, Cu-treated cells showed upregulation of several motility and chemotaxis proteins, and increased cell motility was observed phenotypically. Our results reveal a highly dynamic proteomic response, provide fundamental insights into the VBNC state and emphasize the advantages of time-resolved proteomic analysis.

Indexed as

Bacterial ProteinsCopperCupriavidusProteomeProteomicsChromatography, LiquidMicrobial ViabilityOxidative StressTandem Mass SpectrometryBacterial ProteinsCopperProteome

Identifiers

PMID39963715
PMCPMC11886801

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.